io.github.mrfentmen/pathway-commons-mcp
Pathway Commons graph search: find pathways, proteins and complexes by name
MCP-сервер · от mrfentmen
Коротко
io.github.mrfentmen/pathway-commons-mcp: MCP-сервер, издатель mrfentmen. Витрин, которые мы читаем и где он опубликован: 1 (Official MCP Registry). Мы впервые увидели его 2026-10-28 и с тех пор изменений не фиксировали. Данные нашего прохода по витринам на 2026-11-06.
Что просит
- Работает на вашем компьютере
Ни одна из витрин, которые мы читаем, не публикует его инструменты или настройки, которые он просит.
Что объявляет, просит и запускает, полностью
Устанавливайте плагины только от разработчиков, которым доверяете. Мы показываем то, что публикуют витрины, и не проверяем плагины.
Работает с
- Claude Code
- Codex
- Cursor
- VS Code
- Copilot CLI
Ссылка в один клик открывает клиент, и он просит подтвердить, прежде чем добавить сервер.
По маркетплейсам, где он опубликован, и объявленному транспорту MCP, как их документирует каждый клиент. Плагины мы не тестируем.
Подключить
Команды и конфигурации собраны только из того, что объявляют витрины. Мы не запускаем их за вас и не проверяем плагины.
Как локальный MCP-сервер: пакет npm
Собрано из того, что объявляет Official MCP Registry.
claude mcp add --transport stdio pathway-commons-mcp -- npx -y @mrfentmen/pathway-commons-mcp
[mcp_servers.pathway-commons-mcp]
command = "npx"
args = ["-y", "@mrfentmen/pathway-commons-mcp"]
{
"mcpServers": {
"pathway-commons-mcp": {
"command": "npx",
"args": [
"-y",
"@mrfentmen/pathway-commons-mcp"
]
}
}
}
Где опубликован
| Витрина | Статус | Версия | Числа | Проверен | Впервые замечен |
|---|---|---|---|---|---|
| Official MCP Registry (Открыть запись реестра) | Опубликован | 1.0.1 | Форки (GitHub): 0 Звёзды (GitHub): 0 |
Не помечен |
Каждое число принадлежит своей витрине и никогда не складывается с числами других витрин. Если витрина число не публикует, мы его не показываем: нет числа не значит ноль.
Что менялось
- Стал продуктом, за которым мы следим
- Official MCP Registry: появился
Похожие плагины
Продукты, чьи собственные названия, описания, инструменты и скиллы ближе всего по смыслу к этому, на всех витринах, которые мы читаем. Близость упорядочена только внутри этого списка.
-
reactome-mcp io.github.mrfentmen/reactome-mcp
Keyless MCP server for Reactome: search biological pathways, get pathway details, species,...
-
Construct, inspect, visualize, and simulate evidence-backed ODE models with BioMASS
-
kegg-mcp io.github.mrfentmen/kegg-mcp
Search KEGG genes and compounds, read entries and list their pathways - keyless.
-
string-db-mcp io.github.mrfentmen/string-db-mcp
STRING protein networks: map identifiers and list interaction partners with confidence scores
-
opentargets io.github.nickzren/opentargets
Read-only Open Targets: targets, diseases, drugs and evidence by name or ID. No API key needed.
-
Query the KEGG bioinformatics database — pathways, genes, compounds, drugs, enzymes, diseases, reactions, and more via 34 read-only MCP tools. No API key required.
-
MCP server for AlphaFold and 8 other biomedical data sources with a local SQLite knowledge graph
-
Query STRING interactions, enrichment, annotations, homology, and PPI networks.
-
mygene-mcp io.github.mrfentmen/mygene-mcp
Gene annotations from mygene.info: search genes by symbol or keyword and read full records
-
opentargets-mcp io.github.mrfentmen/opentargets-mcp
Keyless MCP server for Open Targets: gene/disease/drug search, target details, disease associations.
Похожие плагины по витринам
Тот же вопрос к каждой витрине по отдельности: есть ли там аналог этого плагина?
Есть на витрине Claude Code: claude-plugins-community (5)
-
197 ready-to-use life sciences skills that turn Claude into a domain expert for genomics, proteomics, drug discovery, biostatistics, scientific computing, and scientific writing…
-
FastMCP server for surgical queries against a vault knowledge graph (NetworkX no
FastMCP server for surgical queries against a vault knowledge graph (NetworkX node-link JSON).…
-
Zero-config MCP server for searchable documentation. SQLite or PostgreSQL.
-
Build and query Compact Knowledge Graphs directly in Claude Code. Includes a skill to convert any CSV into a CKG and an MCP server with 8 pre-built domains. 42x more efficient…
-
Forensic-grade PubMed research engine for Claude Code. Search 36M+ biomedical articles with PICO-structured queries, synthesize evidence with GRADE confidence ratings, critically…
Есть на витрине Claude Code: claude-plugins-official (5)
-
Predict structures, screen molecules and proteins, and design binders with Boltz from Claude Code.
-
Figma design platform integration. Access design files, extract component information, read design tokens, and translate designs into code. Bridge the gap between design and…
-
mcp-server io.github.cap-js/mcp-server
Model Context Protocol (MCP) server for AI-assisted development of CAP applications.
-
Exa AI web search, deep research, and content extraction. Provides MCP tools and research skills for comprehensive web search, people discovery, company research, academic papers…
-
Find the right NVIDIA skill for GPU acceleration, CUDA, AI agents, data loading, training, inference, robotics, Physical AI, Omniverse, simulation, and other NVIDIA-powered…
Есть на витрине Claude: knowledge-work-plugins (5)
-
Connect to preclinical research tools and databases (literature search, genomics analysis, target prioritization) to accelerate early-stage life sciences R&D
-
Evidence-backed BioPharma research workflows over Maven Bio's drug, trial, company, and deal knowledge graph. Skills for competitive pipelines, indication landscapes, asset…
-
Figma design platform integration. Access design files, extract component information, read design tokens, and translate designs into code. Bridge the gap between design and…
-
Exa AI web search, deep research, and content extraction. Provides MCP tools and research skills for comprehensive web search, people discovery, company research, academic papers…
-
Search companies and contacts, enrich leads, find lookalikes, and get AI-ranked contact recommendations. Pre-built skills chain multiple ZoomInfo tools into complete B2B sales…
Есть на витрине Codex: openai-curated (openai/plugins) (5)
-
General life-sciences research workflows with query routing, evidence synthesis, and optional parallel subagent analysis across genetics, omics, biology, chemistry, structure…
-
Predict structures, screen molecules and proteins, and design binders.
-
Guided NGS intake, local execution, and public-pipeline routing for BCL, FASTQ, DNA variant, RNA-seq, single-cell, epigenomics, amplicon, and metagenomics analyses, with deeper…
-
Use MagicPath to find, inspect, install, create, and edit UI components from Codex.
-
Skills for NVIDIAs ecosystem spans GPU acceleration, CUDA, AI agents, inference, robotics, Physical AI, Omniverse, and simulation. This plugin helps you understand the pieces…
Есть на витрине Community GitHub marketplaces (5)
-
Query the KEGG bioinformatics database — pathways, genes, compounds, drugs, enzymes, diseases, reactions, and more via 34 read-only MCP tools. No API key required.
-
Read-only biomedical search and evidence retrieval across BioMCP's CLI command grammar (genes, variants, trials, articles, drugs, diseases, pathways, proteins, and more). Wires…
-
197 ready-to-use life sciences skills that turn Claude into a domain expert for genomics, proteomics, drug discovery, biostatistics, scientific computing, and scientific writing…
-
tooluniverse io.github.mims-harvard/tooluniverse
2,700+ scientific tools for AI scientists: life science, research, literature, and more.
-
arxiv-mcp-server io.github.blazickjp/arxiv-mcp-server
Search arXiv papers, download full text, semantic search, citation graphs, and alerts via MCP.
Есть на витрине Copilot CLI: github/awesome-copilot (5)
-
Complete toolkit for building Model Context Protocol (MCP) servers in Go using the official github.com/modelcontextprotocol/go-sdk. Includes instructions for best practices, a…
-
Safe BLE diagnostics, evidence workflows, and guarded automation for AI agents.
-
Figma design platform integration. Access design files, extract component information, read design tokens, and translate designs into code. Bridge the gap between design and…
-
Complete toolkit for building Model Context Protocol (MCP) servers in TypeScript/Node.js using the official SDK. Includes instructions for best practices, a prompt for generating…
-
Complete toolkit for building Model Context Protocol (MCP) servers in Kotlin using the official io.modelcontextprotocol:kotlin-sdk library. Includes instructions for best…
Есть на витрине Copilot CLI: github/copilot-plugins (5)
-
mcp-apps
Generate MCP App widgets for MCP tools. Produces self-contained HTML widgets using the MCP Apps protocol.
-
Build Power Apps Canvas Apps using the Canvas Authoring MCP server.
-
Toolkit for building Microsoft 365 Copilot declarative agents — scaffolding, JSON manifest development, and capability configuration.
-
workiq
Query Microsoft 365 data with natural language — emails, meetings, documents, Teams messages, and more.
-
model-apps
Build and deploy Power Apps generative pages for model-driven apps with specialist agents for planning, entity creation, and parallel code generation. Requires PAC CLI >= 2.7.0…
Есть на витрине Cursor: cursor/plugins (5)
-
Draw and export hand-drawn diagrams from chat.
-
Fan large tasks out across parallel cloud agents with planners, workers, verifiers, and structured handoffs.
-
Let Grok Bot reach MCP servers on your private Tailscale network: connect your own tailnet, or your team's company tailnets turned on by a team admin, with each member using their…
-
Iterative self-referential AI loops using the Ralph Wiggum technique.
-
playwright-mcp io.github.microsoft/playwright-mcp
Playwright Tools for MCP
Есть на витрине Docker MCP Catalog (5)
-
The Official Model Context Protocol (MCP) server for Kagi Search & other tools.
-
Real-time web search, reasoning, and research through Perplexity's API
-
mcp-neo4j-cypher io.github.neo4j-contrib/mcp-neo4j-cypher
A simple Neo4j MCP server that allows you to run Cypher queries against a Neo4j database.
-
Graph database queries with Cypher and Gremlin.
-
mcp-neo4j-data-modeling io.github.neo4j-contrib/mcp-neo4j-data-modeling
A simple Neo4j MCP server for creating graph data models.
Есть на витрине Official MCP Registry (5)
-
reactome-mcp io.github.mrfentmen/reactome-mcp
Keyless MCP server for Reactome: search biological pathways, get pathway details, species,...
-
Construct, inspect, visualize, and simulate evidence-backed ODE models with BioMASS
-
kegg-mcp io.github.mrfentmen/kegg-mcp
Search KEGG genes and compounds, read entries and list their pathways - keyless.
-
string-db-mcp io.github.mrfentmen/string-db-mcp
STRING protein networks: map identifiers and list interaction partners with confidence scores
-
opentargets io.github.nickzren/opentargets
Read-only Open Targets: targets, diseases, drugs and evidence by name or ID. No API key needed.
Есть на витрине PyPI (MCP servers) (5)
-
opentargets io.github.nickzren/opentargets
Read-only Open Targets: targets, diseases, drugs and evidence by name or ID. No API key needed.
-
MCP server for AlphaFold and 8 other biomedical data sources with a local SQLite knowledge graph
-
Verifiable, release-aware protein evidence workflows over UniProt and linked scientific sources.
-
Federated academic search, citation traversal, persistent PDF download, and temporary reading.
-
Semantic knowledge engine for Obsidian with auto-classification and DAG hierarchy
Есть на витрине npm registry (MCP servers) (5)
-
chembl-mcp-server io.github.cyanheads/chembl-mcp-server
Link compounds to protein targets, rank bioactivity, and look up drug mechanisms and indications.
-
uniprot-mcp-server io.github.cyanheads/uniprot-mcp-server
Protein research over UniProtKB: search by function, fetch curated records, map IDs, proteomes.
-
Biomedical MCP server: genes, variants, trials, literature, patents, optional SQL/R/biowasm tools.
-
google-surf-mcp io.github.HarimxChoi/google-surf-mcp
Web, academic and code search with graph RAG, data lineage, ontology and cross-project schema links.
-
protein-mcp-server io.github.cyanheads/protein-mcp-server
Federated protein structure & annotation across experimental (PDB) and predicted (AlphaFold) models.
Найдено по смыслу, а не по общему коду или репозиторию: похожие плагины остаются разными продуктами, и это не обзор и не рекомендация.
Хотите такой знак у своего плагина в нашем каталоге?
Докажите, что поддерживаете его, файлом в репозитории, файлом на вашем домене или DNS-записью, и сможете показать этот знак на карточке, а ещё живые баннеры для сайта и README. Как проходит подтверждение
Ещё вы будете получать уведомления, когда витрина добавит плагин, снимет его, изменит отметку verified или список того, что он просит, а его удалённый endpoint встанет на мониторинг как веб-сервис.
Данные витрины Official MCP Registry. Числа взяты из наших регулярных обходов витрин, последняя проверка . Контакты издателей плагинов мы не публикуем.