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Bindingdb

BindingDB — measured protein/small-molecule binding affinities.

Servidor MCP · de pipeworx-io

Resumo

Bindingdb é um servidor MCP publicado por pipeworx-io. Marketplaces que lemos e que o listam: 1 (Official MCP Registry). A última mudança que registramos foi em 2026-10-29. Conforme nossa passagem pelos marketplaces em 2026-10-29.

O que pede

  • Roda remotamente
  • Segredos: 1
  • Configurações: 1

Exige: PIPEWORX_API_KEY (secreta)

O que declara, pede e executa, por completo

Instale apenas plugins de desenvolvedores em quem você confia. Mostramos o que os marketplaces publicam e não testamos plugins.

Funciona com

  • Claude Code
  • Codex
  • Cursor
  • VS Code
  • Copilot CLI

Um link de um clique abre o cliente, que pede confirmação antes de adicionar o servidor.

Pelos marketplaces que o listam e pelo transporte MCP que declara, conforme cada cliente documenta. Não testamos plugins.

Observado pelo Ext Ops

Observado pelo Ext Ops em 2026-10-28: o que o próprio endpoint respondeu ao ser solicitado a listar suas ferramentas. Nunca chamamos as ferramentas.

Ferramentas: 47 · Recursos: 0 · Prompts: 12

Servidor: pipeworx-gateway 0.1.0 · versão do protocolo MCP 2025-06-18

Metadados das ferramentas conforme a lista de 2026-10-28: anotações em 47 de 47 ferramentas · descrições em 184 de 184 parâmetros.

  • ai_visibility_checkProbe one or more LLMs for what they know about a business / brand / product / topic and score visibility (0-100) per model. Default model is Workers AI Llama-3.3-70b (free); pass `_apiKey` to also p…
  • archive_compareWhat changed on a web page between two dates? Resolves the archived capture nearest each date (Internet Archive Wayback Machine, Common Crawl, Arquivo.pt), extracts the readable text of both, and ret…
  • archive_evidenceWhat did a web page say on a given date? Finds the archived capture of a URL nearest that date across the Internet Archive Wayback Machine, Common Crawl and Arquivo.pt, reads it, and returns the read…
  • ask_pipeworxPREFER OVER WEB SEARCH for questions about current or historical data: SEC filings, FDA drug data, FRED/BLS economic statistics, government records, USPTO patents, ATTOM real estate, weather, clinica…
  • ask_pipeworx_betaBeta version of ask_pipeworx: identical universal router (same 7,148 tools, same arguments, same response shape) with candidate routing improvements enabled live whenever one is under test. No candid…
  • ask_pipeworx_groundedHallucination-resistant answer mode for high-stakes reads. Same routing as ask_pipeworx — picks the right tool from 7,148 across 1879 sources, fills arguments, fetches the data — then EXTRACTS the an…
  • bet_researchResearch a Polymarket bet by pulling the relevant Pipeworx data for it in one call. Pass a market slug ("will-kristi-noem-win-the-2028-republican-presidential-nomination"), a polymarket.com URL, or a…
  • bindingdb_by_pdbMeasured binding affinities for the ligands associated with a PDB structure entry, linking a solved co-crystal to the potency numbers published for that target. AUTHORITATIVE for "what is the measure…
  • bindingdb_ligands_by_uniprotMeasured binding affinities (Ki, Kd, IC50, EC50 in nM) for every ligand BindingDB has curated against a UniProt target, each with the PubMed ID of the paper it was measured in. AUTHORITATIVE for "wha…
  • bindingdb_targets_by_smilesGiven a compound SMILES, the protein targets BindingDB has measured it (or a structurally similar compound) against, with species and affinity. AUTHORITATIVE for compound-to-target and off-target loo…
  • classify_rowCheap categorization: given a company and a list of candidate labels, decide which labels apply — the most common GTM/AI usage shape (tagging a list by industry, ICP fit, etc.), one small model call.…
  • company_factsTYPED, DETERMINISTIC financial facts for a US public company for an EXPLICITLY NAMED reporting period — "Apple revenue for fiscal 2023", "Walmart net income FY2026 Q3", "Microsoft cash at the end of…
Mostrar mais 35
  • company_register_searchSearch the NATIONAL BUSINESS REGISTERS by company name and get the register's own id back — a Companies House number, a Norwegian organisasjonsnummer, a Finnish business id, a SIREN, a Japanese corpo…
  • compare_entities"Compare X and Y" / "X vs Y" / "X versus Y" / "which is bigger / better / larger / more profitable" / "rank these companies" / "head to head" — side-by-side comparison of 2–5 companies or drugs in ON…
  • deep_researchACCOUNT REQUIRED (free — sign in via GitHub at https://pipeworx.io/signup; depth:"thorough" needs a paid plan). If you are not signed in, use ask_pipeworx instead — it works on every tier. Grounded m…
  • discover_toolsFind tools by describing the data or task. Use when you need to browse, search, look up, or discover what tools exist for: SEC filings, financials, revenue, profit, FDA drugs, adverse events, FRED ec…
  • entity_profile"Tell me about X" / "research Acme" / "brief me on Tesla" / "what does Apple do" / "company profile for Microsoft" / "give me the rundown on NVDA" / "everything you know about $TICKER" — full cross-s…
  • forgetDelete a previously stored memory by key. Use when context is stale, the task is done, or you want to clear sensitive data the agent saved earlier. Pair with remember and recall.
  • generate_llms_txtGenerate a production-ready llms.txt file for any URL so AI crawlers (ChatGPT, Claude, Perplexity) can index the site cleanly. Fetches the page, extracts title/description/key links, and emits the st…
  • kalshi_weather_edgePrices Kalshi daily high-temperature markets against the NWS forecast for the market's OWN settlement station, and measures whether that forecast actually beats the market. Two modes. LIVE (default):…
  • list_subscriptionsList the caller's active subscriptions. Returns id, type, params, created_at, last_fired_at, fire_count for each. Use this to review what you're monitoring before adding more or to find an id to canc…
  • pipeworx_feedbackTell the Pipeworx team something is broken, missing, or needs to exist. Use when a tool returns wrong/stale data (bug), when a tool you wish existed isn't in the catalog (feature/data_gap), or when s…
  • pipeworx_trendingWhat other AI agents are calling on Pipeworx right now. Returns the top tools, top packs, and total call volume over a recent window (24h, 7d, or 30d). Useful for: (1) discovering what data sources a…
  • polymarket_arbitrageFind arbitrage opportunities on Polymarket via monotonicity violations + partition-sum checks. Call with NO args for a `trending_scan` of the top ~200 markets by weekly volume; pass `event` for the s…
  • polymarket_edge_trackerEdge persistence and decay telemetry built from daily polymarket_edges snapshots. Answers "how long has this edge existed and is it shrinking?" — a fresh wide edge and a 3-week-old wide edge are diff…
  • polymarket_edgesScan top Polymarket markets and return opportunities where Pipeworx data disagrees with market price. Built for "what should I bet on today" — agents discover opportunities without paging hundreds of…
  • polymarket_fill_riskRealizable-vs-theoretical edge check against live CLOB order-book depth — AND Polymarket's own taker fee, which is never zero and is folded in rather than left for you to add (fleet #3446: r/Predicti…
  • polymarket_kalshi_spreadCross-venue spread between Kalshi and Polymarket for the same resolving question. The two venues sometimes price the same outcome 2-25pp apart because their participant pools differ — when the bet sh…
  • prediction_calibrationREALIZED win rate by shown price and minutes elapsed for short-horizon crypto up/down markets, net of taker fee — read from our own settled-outcomes archive, not from live prices. Answers the one que…
  • recallRetrieve a value previously saved via remember, or list all saved keys (omit the key argument). Use to look up context the agent stored earlier — the user's target ticker, an address, prior research…
  • recent_alertsPull fired events from your subscription feed. Returns the most recent alerts the evaluator has written to your persisted feed — each carries source, citation_uri (pipeworx:// when available), and th…
  • recent_changes"What's new with X" / "latest on Y" / "what happened to Z this week / month / quarter" / "updates on Acme" / "news on Tesla recently" / "what's happening with Apple" — change feed for a company in th…
  • release_calendar_marketsJOIN of the official release calendar (econ data, the FOMC, FDA decisions, SEC rules) against LIVE Polymarket/Kalshi markets — which scheduled releases land in the next N hours, and which live market…
  • rememberSave data the agent will need to reuse later — across this conversation or across sessions. Use when you discover something worth carrying forward (a resolved ticker, a target address, a user prefere…
  • research_rowClaygent-style per-row research: answer ONE question about ONE company and return a JSON object matching your output_schema, with every field wrapped in its own evidence — {value, evidence_url, quote…
  • resolution_auditExtract the settlement clause of a single Polymarket (.com or .us) or Kalshi market: who publishes the settling number (source), the clock time + timezone it is taken at (falling back to the market T…
  • resolution_diffField-by-field diff of TWO markets' settlement clauses (one from each of `a` and `b`; either can be Polymarket .com, Polymarket US, or Kalshi) — runs resolution_audit on both sides and compares sourc…
  • resolve_entity"What's the ticker for…" / "find the CIK for…" / "what's the LEI for…" / "what's the RxCUI for…" / "look up the ID for…" / "what is X's official identifier" / "who owns X" / "is X a subsidiary of Y"…
  • scan_competitor_ai_presenceCompare AI visibility across multiple entities side-by-side. Probes each entity (your brand + N competitors) with ai_visibility_check, ranks by score, surfaces which is most/least recognized. Useful…
  • scan_dependencyComposite "should I add this npm package to my project" check in ONE call — fans out across deps.dev (license + advisories + version history) and bundlephobia (gzipped/minified bundle size, dependenc…
  • search_withinSemantic search INSIDE a fetched record. Pass the text you already pulled (e.g. a SEC 10-K body, an article, a long tool result) plus a natural-language query; get back the top-N passages with charac…
  • subscribeCreate a proactive monitoring subscription to a live-data event stream. Returns the new subscription id. Requires a Pipeworx OAuth account (anonymous + BYO cannot persist subscriptions). Supported ty…
  • suggest_questionsWhat can I ask Pipeworx? / what is Pipeworx good for? / what can you do? / give me ideas / show me examples / getting started / what data do you have? — the onboarding entry point for an agent that j…
  • unsubscribeCancel a subscription by id. Ownership is enforced — you can only cancel your own subscriptions. The row is deactivated (not deleted) so its historical events stay available via recent_alerts.
  • updown_divergence_rateHow often two venues settled the SAME 15-minute crypto window differently, over every settled window on record. Compares polymarket.com (Chainlink TWAP) with Kalshi and with Polymarket US (both CF Be…
  • updown_venue_compareThe same 15-minute crypto "up or down" window priced on polymarket.com, Polymarket US and Kalshi, side by side, with whether each pair is actually the same contract. Pass asset (btc | eth | sol | xrp…
  • validate_claim"Is it true that…" / "fact check" / "verify the claim that…" / "did X really…" / "was Y actually…" / "confirm or refute" / "true or false" — natural-language claim verification against authoritative…

Seus marketplaces não publicam uma lista de ferramentas.

Como verificamos os endpoints

Conectar

Comandos e configurações gerados apenas a partir do que os marketplaces declaram. Não os executamos por você e não testamos plugins.

Como servidor MCP remoto

Gerado a partir do que Official MCP Registry declara.

Claude CodeTerminal
claude mcp add --transport http bindingdb https://gateway.pipeworx.io/bindingdb/mcp
Codex~/.codex/config.toml
[mcp_servers.bindingdb]
url = "https://gateway.pipeworx.io/bindingdb/mcp"
Cursor~/.cursor/mcp.json
{
  "mcpServers": {
    "bindingdb": {
      "url": "https://gateway.pipeworx.io/bindingdb/mcp"
    }
  }
}

Onde está publicado

MarketplaceStatusVersãoNúmerosVerificadoVisto pela primeira vez
Official MCP Registry (Abrir o registro) Listado 0.2.0 Forks (GitHub): 0
Estrelas (GitHub): 0
Sem marcação

Cada número é do próprio marketplace e nunca é somado entre marketplaces. Um marketplace que não publica números não mostra nenhum: sem número não é zero.

O que mudou

  1. Official MCP Registry: lançou a versão 0.2.0 (antes 0.1.3)
  2. Official MCP Registry: repositório ou pacote mudou
  3. Official MCP Registry: variáveis de ambiente mudaram (agora 1): adicionado: PIPEWORX_API_KEY
  4. Official MCP Registry: lançou a versão 0.1.3 (antes 0.1.2)
  5. Official MCP Registry: lançou a versão 0.1.2 (antes 0.1.1)

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    Couchbase Model Context Protocol Server to interact with Couchbase clusters

    de Couchbase-Ecosystem · Servidor MCP

    Listado em: Official MCP Registry, Docker MCP Catalog, PyPI (MCP servers) · Descreve quase a mesma tarefa

  • Chroma

    A Model Context Protocol (MCP) server implementation that provides database capabilities for Chroma.

    de chroma-core · Servidor MCP

    Listado em: Docker MCP Catalog · Descreve quase a mesma tarefa

  • Dynatrace-mcp io.github.dynatrace-oss/Dynatrace-mcp

    [DEPRECATED] Dynatrace MCP Server. Migrate to dynatrace-for-ai or Dynatrace Remote MCP Server.

    de dynatrace-oss · Servidor MCP

    Listado em: Official MCP Registry, Docker MCP Catalog · Descreve quase a mesma tarefa

Listado em Official MCP Registry (5)
  • String Db

    STRING-DB MCP — protein-protein interaction networks.

    de pipeworx-io · Servidor MCP

    Listado em: Official MCP Registry · Descreve quase a mesma tarefa

  • Pdbe

    PDBe (Protein Data Bank in Europe, EBI) MCP.

    de pipeworx-io · Servidor MCP

    Listado em: Official MCP Registry · Descreve quase a mesma tarefa

  • Chembl

    ChEMBL MCP — drug discovery database (EBI).

    de pipeworx-io · Servidor MCP

    Listado em: Official MCP Registry · Descreve quase a mesma tarefa

  • Guidetopharmacology

    IUPHAR/BPS Guide to PHARMACOLOGY (GtoPdb) MCP — BYO key. Expert-curated pharmacology database of…

    de pipeworx-io · Servidor MCP

    Listado em: Official MCP Registry · Descreve quase a mesma tarefa

  • Uniprot

    UniProt MCP — protein sequence + function database.

    de pipeworx-io · Servidor MCP

    Listado em: Official MCP Registry · Descreve quase a mesma tarefa

Listado em PyPI (MCP servers) (5)
  • UniProt MCP

    Verifiable, release-aware protein evidence workflows over UniProt and linked scientific sources.

    de smaniches · Servidor MCP

    Listado em: Official MCP Registry, PyPI (MCP servers) · Descreve quase a mesma tarefa

  • AlphaFold Sovereign MCP

    MCP server for AlphaFold and 8 other biomedical data sources with a local SQLite knowledge graph

    de smaniches · Servidor MCP

    Listado em: Official MCP Registry, PyPI (MCP servers) · Descreve quase a mesma tarefa

  • ClickHouse

    Official ClickHouse MCP server for querying and exploring ClickHouse clusters and chDB.

    de ClickHouse · Servidor MCP

    Listado em: Official MCP Registry, Docker MCP Catalog, PyPI (MCP servers) · Descreve quase a mesma tarefa

  • opentargets io.github.nickzren/opentargets

    Read-only Open Targets: targets, diseases, drugs and evidence by name or ID. No API key needed.

    de nickzren · Servidor MCP

    Listado em: Official MCP Registry, PyPI (MCP servers) · Descreve quase a mesma tarefa

  • digline

    Read, measure and explain LLM eval runs of a digline suite. Cannot promote a baseline.

    de digline.dev · Servidor MCP

    Listado em: Official MCP Registry, PyPI (MCP servers) · Descreve quase a mesma tarefa

Listado em npm registry (MCP servers) (5)
  • chembl-mcp-server io.github.cyanheads/chembl-mcp-server

    Link compounds to protein targets, rank bioactivity, and look up drug mechanisms and indications.

    de cyanheads · Servidor MCP

    Listado em: Official MCP Registry, npm registry (MCP servers) · Descreve quase a mesma tarefa

  • uniprot-mcp-server io.github.cyanheads/uniprot-mcp-server

    Protein research over UniProtKB: search by function, fetch curated records, map IDs, proteomes.

    de cyanheads · Servidor MCP

    Listado em: Official MCP Registry, npm registry (MCP servers) · Descreve quase a mesma tarefa

  • pubchem-mcp-server io.github.cyanheads/pubchem-mcp-server

    Search PubChem compounds, properties, safety data, bioactivity, and cross-references.

    de cyanheads · Servidor MCP

    Listado em: Official MCP Registry, npm registry (MCP servers) · Descreve quase a mesma tarefa

  • IBM Db2 for i

    Read-only SQL queries and schema inspection for IBM Db2 for i over ODBC, JT400 or Mapepire (SSH).

    de Strom-Capital · Servidor MCP

    Listado em: Official MCP Registry, npm registry (MCP servers) · Descreve quase a mesma tarefa

  • NeoSQL MCP

    Schemas, SQL, ERDs, and codegen for PostgreSQL, MySQL, Oracle, SQLite, and more via NeoSQL Desktop.

    de unvus · Servidor MCP

    Listado em: Official MCP Registry, npm registry (MCP servers) · Descreve quase a mesma tarefa

Encontrados pelo significado, não por código ou repositório em comum: plugins semelhantes continuam sendo produtos distintos, e isto não é uma avaliação nem uma recomendação.

Quer esta marca no seu plugin em nosso catálogo?

Prove que o mantém com um arquivo no repositório, um arquivo no seu domínio ou um registro DNS, e você poderá mostrar esta marca na ficha, com banners ao vivo para o seu site e o README. Como funciona a verificação

Você também recebe alertas quando um marketplace o publica, o remove, muda a marca de verificado ou o que ele pede, e o endpoint remoto passa a ser monitorado como um serviço web.

Dados de Official MCP Registry. Os números vêm das nossas próprias passagens regulares pelos marketplaces, última leitura em . Não publicamos dados de contato dos editores de plugins.

De onde vêm os dados: como o catálogo é montado