BioMapper
Resolve metabolite, lipid, protein, gene and lab names to knowledge-graph IDs.
Servidor MCP · de trentleslie
Resumo
BioMapper é um servidor MCP publicado por trentleslie. Marketplaces que lemos e que o listam: 1 (Official MCP Registry). Vimos pela primeira vez em 2026-11-04 e não registramos mudanças desde então. Conforme nossa passagem pelos marketplaces em 2026-11-06.
O que pede
- Roda na sua máquina
- Segredos: 1
- Configurações: 4
Exige: BIOMAPPER_API_KEY (secreta)
O que declara, pede e executa, por completo
Instale apenas plugins de desenvolvedores em quem você confia. Mostramos o que os marketplaces publicam e não testamos plugins.
Funciona com
- Claude Code
- Codex
- Cursor
- VS Code
- Copilot CLI
Pelos marketplaces que o listam e pelo transporte MCP que declara, conforme cada cliente documenta. Não testamos plugins.
Conectar
Comandos e configurações gerados apenas a partir do que os marketplaces declaram. Não os executamos por você e não testamos plugins.
Como servidor MCP local: pacote PyPI
Gerado a partir do que Official MCP Registry declara.
claude mcp add --env "BIOMAPPER_API_KEY=<YOUR_BIOMAPPER_API_KEY>" --transport stdio biomapper -- uvx biomapper[mcp_servers.biomapper]
command = "uvx"
args = ["biomapper"]
[mcp_servers.biomapper.env]
BIOMAPPER_API_KEY = "<YOUR_BIOMAPPER_API_KEY>"{
"mcpServers": {
"biomapper": {
"command": "uvx",
"args": [
"biomapper"
],
"env": {
"BIOMAPPER_API_KEY": "<YOUR_BIOMAPPER_API_KEY>"
}
}
}
}Substitua os valores entre sinais de menor e maior pelos seus. Mostramos os nomes das configurações, nunca valores.
Configurações opcionais que também indica: BIOMAPPER_BASE_URL, BIOMAPPER_MCP_HOME, BIOMAPPER_MCP_ROOTS.
Onde está publicado
| Marketplace | Status | Versão | Números | Verificado | Visto pela primeira vez |
|---|---|---|---|---|---|
| Official MCP Registry (Abrir o registro) | Listado | 1.6.2 | Forks (GitHub): 0 Estrelas (GitHub): 0 |
Sem marcação |
Cada número é do próprio marketplace e nunca é somado entre marketplaces. Um marketplace que não publica números não mostra nenhum: sem número não é zero.
O que mudou
- Passou a ser um produto que acompanhamos
- Official MCP Registry: apareceu
Plugins semelhantes
Produtos cujos próprios nomes, descrições, ferramentas e skills são os mais próximos deste pelo significado, em todos os marketplaces que lemos. A proximidade é ordenada apenas dentro desta lista.
-
Query the KEGG bioinformatics database — pathways, genes, compounds, drugs, enzymes, diseases, reactions, and more via 34 read-only MCP tools. No API key required.
-
Query STRING interactions, enrichment, annotations, homology, and PPI networks.
-
metabolights-mcp io.github.mrfentmen/metabolights-mcp
EBI MetaboLights: search public metabolomics studies and read study detail and organisms
-
General life-sciences research workflows with query routing, evidence synthesis, and optional parallel subagent analysis across genetics, omics, biology, chemistry, structure…
-
Connect AI clients to biomedical data and tools.
-
UK Data: Protein data (UniProt)
UniProt protein data: find proteins, map genes to proteins, function and disease links
-
kegg-mcp io.github.mrfentmen/kegg-mcp
Search KEGG genes and compounds, read entries and list their pathways - keyless.
-
Naturepedia Canonical Discovery
Search and resolve Naturepedia, Robbie's Razor, and GC-MRD-v2.0 canonical resources.
-
chembl-mcp io.github.mrfentmen/chembl-mcp
Drug molecules and bioactivity from the ChEMBL database. No key required.
-
tooluniverse io.github.mims-harvard/tooluniverse
2,700+ scientific tools for AI scientists: life science, research, literature, and more.
Plugins semelhantes por marketplace
A mesma pergunta feita a cada marketplace separadamente: existe lá um equivalente deste plugin?
Listado em Claude Code: claude-plugins-community (5)
-
197 ready-to-use life sciences skills that turn Claude into a domain expert for genomics, proteomics, drug discovery, biostatistics, scientific computing, and scientific writing…
-
Predict structures, screen molecules and proteins, and design binders with Boltz from Claude Code.
-
Build and query Compact Knowledge Graphs directly in Claude Code. Includes a skill to convert any CSV into a CKG and an MCP server with 8 pre-built domains. 42x more efficient…
-
Forensic-grade PubMed research engine for Claude Code. Search 36M+ biomedical articles with PICO-structured queries, synthesize evidence with GRADE confidence ratings, critically…
-
msds-chain io.github.littleblakew/msds-chain
Chemical safety intelligence — 25 tools: compatibility, hazards, PPE, compliance, SDS lookup
Listado em Claude Code: claude-plugins-official (5)
-
Predict structures, screen molecules and proteins, and design binders with Boltz from Claude Code.
-
Analyze business data and build custom Pigment models, metrics, and boards through natural language.
-
Create, connect, and interact with an AlloyDB for PostgreSQL database and data.
-
Atlan data catalog plugin for Claude Code. Search, explore, govern, and manage your data assets through natural language. Powered by the Atlan MCP server with semantic search…
-
informatica-for-claude-platform
Governed catalog discovery for Informatica Intelligent Data Management Cloud (CDGC): find tables, columns, files, glossary terms and policies across the enterprise catalog, check…
Listado em Claude: knowledge-work-plugins (5)
-
Connect to preclinical research tools and databases (literature search, genomics analysis, target prioritization) to accelerate early-stage life sciences R&D
-
Evidence-backed BioPharma research workflows over Maven Bio's drug, trial, company, and deal knowledge graph. Skills for competitive pipelines, indication landscapes, asset…
-
Skills for working with Langfuse, the open-source LLM engineering platform for tracing, prompt management, and evaluation.
-
Atlan data catalog plugin for Claude Code. Search, explore, govern, and manage your data assets through natural language. Powered by the Atlan MCP server with semantic search…
-
informatica-for-claude-platform
Governed catalog discovery for Informatica Intelligent Data Management Cloud (CDGC): find tables, columns, files, glossary terms and policies across the enterprise catalog, check…
Listado em Codex: openai-curated (openai/plugins) (5)
-
General life-sciences research workflows with query routing, evidence synthesis, and optional parallel subagent analysis across genetics, omics, biology, chemistry, structure…
-
Predict structures, screen molecules and proteins, and design binders.
-
Guided NGS intake, local execution, and public-pipeline routing for BCL, FASTQ, DNA variant, RNA-seq, single-cell, epigenomics, amplicon, and metagenomics analyses, with deeper…
-
Use MagicPath to find, inspect, install, create, and edit UI components from Codex.
-
Evaluate Codex skills and plugins from chat with a beginner-friendly start command, local-first reports, token budget explanations, and guided benchmarking.
Listado em Community GitHub marketplaces (5)
-
Query the KEGG bioinformatics database — pathways, genes, compounds, drugs, enzymes, diseases, reactions, and more via 34 read-only MCP tools. No API key required.
-
tooluniverse io.github.mims-harvard/tooluniverse
2,700+ scientific tools for AI scientists: life science, research, literature, and more.
-
197 ready-to-use life sciences skills that turn Claude into a domain expert for genomics, proteomics, drug discovery, biostatistics, scientific computing, and scientific writing…
-
scientific-databases
Programmatic access to public scientific databases and APIs.
-
chemistry-research
Cheminformatics, molecular modelling and research reporting.
Listado em Copilot CLI: github/awesome-copilot (5)
-
Safe BLE diagnostics, evidence workflows, and guarded automation for AI agents.
-
Three-layer verification pipeline for AI output. Extracts claims, finds sources, and flags hallucination risks so humans can verify before acting.
-
Visualizes live session AI-credit usage as a Pac-Man board with pellets, ghosts, fruit milestones, and game-over limits.
-
Explore and query TimeBase streams, schemas, QQL, symbols, and server status via MCP.
-
See your local Copilot token usage by day, model, and session, and get tips to use it more efficiently.
Listado em Copilot CLI: github/copilot-plugins (5)
-
workiq
Query Microsoft 365 data with natural language — emails, meetings, documents, Teams messages, and more.
-
Toolkit for building Microsoft 365 Copilot declarative agents — scaffolding, JSON manifest development, and capability configuration.
-
Build Power Apps Canvas Apps using the Canvas Authoring MCP server.
-
model-apps
Build and deploy Power Apps generative pages for model-driven apps with specialist agents for planning, entity creation, and parallel code generation. Requires PAC CLI >= 2.7.0…
-
mcp-apps
Generate MCP App widgets for MCP tools. Produces self-contained HTML widgets using the MCP Apps protocol.
Listado em Cursor: cursor/plugins (5)
-
Enrich people and companies, run AI research agents.
-
Ask Databricks Genie questions about your workspace's data in plain language.
-
Work with PostHog from chat: query product analytics and run SQL, manage feature flags and experiments, triage error tracking issues, and review session replays, surveys, and…
-
Explore datasets and tables and run SQL queries.
-
Iterative self-referential AI loops using the Ralph Wiggum technique.
Listado em Docker MCP Catalog (5)
-
Knowledge graph-based persistent memory system.
-
The Official Model Context Protocol (MCP) server for Kagi Search & other tools.
-
Generate, run, debug lifescience workflows.
-
mcp-neo4j-memory io.github.neo4j-contrib/mcp-neo4j-memory
MCP Neo4j Knowledge Graph Memory Server
-
mcp-neo4j-cypher io.github.neo4j-contrib/mcp-neo4j-cypher
A simple Neo4j MCP server that allows you to run Cypher queries against a Neo4j database.
Listado em Official MCP Registry (5)
-
Query STRING interactions, enrichment, annotations, homology, and PPI networks.
-
metabolights-mcp io.github.mrfentmen/metabolights-mcp
EBI MetaboLights: search public metabolomics studies and read study detail and organisms
-
Connect AI clients to biomedical data and tools.
-
UK Data: Protein data (UniProt)
UniProt protein data: find proteins, map genes to proteins, function and disease links
-
kegg-mcp io.github.mrfentmen/kegg-mcp
Search KEGG genes and compounds, read entries and list their pathways - keyless.
Listado em PyPI (MCP servers) (5)
-
opentargets io.github.nickzren/opentargets
Read-only Open Targets: targets, diseases, drugs and evidence by name or ID. No API key needed.
-
MCP server for AlphaFold and 8 other biomedical data sources with a local SQLite knowledge graph
-
Find & fetch research datasets across 21 archives, omics registries, and literature sources.
-
Connect AI assistants to PhenoWorks projects, datasets, and analysis pipelines through MCP.
-
Verifiable, release-aware protein evidence workflows over UniProt and linked scientific sources.
Listado em npm registry (MCP servers) (5)
-
uniprot-mcp-server io.github.cyanheads/uniprot-mcp-server
Protein research over UniProtKB: search by function, fetch curated records, map IDs, proteomes.
-
chembl-mcp-server io.github.cyanheads/chembl-mcp-server
Link compounds to protein targets, rank bioactivity, and look up drug mechanisms and indications.
-
pubchem-mcp-server io.github.cyanheads/pubchem-mcp-server
Search PubChem compounds, properties, safety data, bioactivity, and cross-references.
-
pubcrawl io.github.nickjlamb/pubcrawl
PubMed & Europe PMC literature search, US/UK drug labelling, and clinical trials for AI assistants.
-
protein-mcp-server io.github.cyanheads/protein-mcp-server
Federated protein structure & annotation across experimental (PDB) and predicted (AlphaFold) models.
Encontrados pelo significado, não por código ou repositório em comum: plugins semelhantes continuam sendo produtos distintos, e isto não é uma avaliação nem uma recomendação.
Quer esta marca no seu plugin em nosso catálogo?
Prove que o mantém com um arquivo no repositório, um arquivo no seu domínio ou um registro DNS, e você poderá mostrar esta marca na ficha, com banners ao vivo para o seu site e o README. Como funciona a verificação
Você também recebe alertas quando um marketplace o publica, o remove, muda a marca de verificado ou o que ele pede, e o endpoint remoto passa a ser monitorado como um serviço web.
Dados de Official MCP Registry. Os números vêm das nossas próprias passagens regulares pelos marketplaces, última leitura em . Não publicamos dados de contato dos editores de plugins.