io.github.mrfentmen/pdb-mcp
RCSB PDB: search 230k+ structures, read chains, ligands, formulas and citations — keyless.
Servidor MCP · de mrfentmen
Resumen
io.github.mrfentmen/pdb-mcp es un servidor MCP publicado por mrfentmen. Marketplaces que leemos y que lo publican: 1 (Official MCP Registry). Lo vimos por primera vez el 2026-10-27 y desde entonces no hemos registrado cambios. Según nuestra pasada por los marketplaces del 2026-11-06.
Qué pide
- Se ejecuta en tu equipo
Ninguno de los marketplaces que leemos publica sus herramientas ni los ajustes que pide.
Lo que declara, pide y ejecuta, completo
Instala solo plugins de desarrolladores en los que confíes. Mostramos lo que publican los marketplaces y no probamos plugins.
Funciona con
- Claude Code
- Codex
- Cursor
- VS Code
- Copilot CLI
Un enlace de un clic abre el cliente, que pide confirmación antes de añadir el servidor.
Según los marketplaces que lo listan y el transporte MCP que declara, tal como lo documenta cada cliente. No probamos plugins.
Conectar
Comandos y configuraciones generados solo a partir de lo que declaran sus marketplaces. No los ejecutamos por ti ni probamos plugins.
Como servidor MCP local: paquete npm
Generado a partir de lo que declara Official MCP Registry.
claude mcp add --transport stdio pdb-mcp -- npx -y pdb-mcp[mcp_servers.pdb-mcp]
command = "npx"
args = ["-y", "pdb-mcp"]{
"mcpServers": {
"pdb-mcp": {
"command": "npx",
"args": [
"-y",
"pdb-mcp"
]
}
}
}Dónde está publicado
| Marketplace | Estado | Versión | Cifras | Verificado | Visto por primera vez |
|---|---|---|---|---|---|
| Official MCP Registry (Abrir el registro) | Publicado | 1.0.0 | Forks (GitHub): 0 Estrellas (GitHub): 0 |
Sin marca |
Cada cifra es del propio marketplace y nunca se suma entre marketplaces. Un marketplace que no publica cifras no muestra ninguna: sin número no es cero.
Qué cambió
- Pasó a ser un producto que seguimos
- Official MCP Registry: apareció
Plugins similares
Productos cuyos propios nombres, descripciones, herramientas y skills son los más cercanos a este por su significado, en todos los marketplaces que leemos. La cercanía se ordena solo dentro de esta lista.
-
MCP server to search, inspect, and cross-reference RCSB Protein Data Bank structures
-
protein-mcp-server io.github.cyanheads/protein-mcp-server
Federated protein structure & annotation across experimental (PDB) and predicted (AlphaFold) models.
-
uniprot-mcp-server io.github.cyanheads/uniprot-mcp-server
Protein research over UniProtKB: search by function, fetch curated records, map IDs, proteomes.
-
rcsb-pdb-mcp io.github.mrfentmen/rcsb-pdb-mcp
Look up protein structures and search the RCSB Protein Data Bank. No key required.
-
ebi-search-mcp io.github.mrfentmen/ebi-search-mcp
EBI Search API: search EMBL-EBI biomedical databases.
-
PubChem MCP — NIH chemistry compound database (no auth)
-
interpro-mcp-server io.github.cyanheads/interpro-mcp-server
Search InterPro entries, map domains onto proteins and PDB structures, and scan raw sequences.
-
RCSB PDB MCP — experimentally determined macromolecular structures.
-
alphafold-mcp io.github.mrfentmen/alphafold-mcp
Keyless MCP server for AlphaFold: protein structure predictions by UniProt accession, confidence...
-
emdb-mcp io.github.mrfentmen/emdb-mcp
EBI Electron Microscopy Data Bank: search cryo-EM maps and read resolution and method
Plugins similares por marketplace
La misma pregunta a cada marketplace por separado: ¿hay allí un equivalente de este plugin?
Publicado en Claude Code: claude-plugins-community (5)
-
Zero-config MCP server for searchable documentation. SQLite or PostgreSQL.
-
mdk-mcp-server io.github.SAP/mdk-mcp-server
Model Context Protocol (MCP) server for AI-assisted development of MDK applications.
-
nodebench io.github.HomenShum/nodebench
260 MCP tools across 49 domains. AI Flywheel, quality gates, research, web scraping.
-
mcp-server io.github.cap-js/mcp-server
Model Context Protocol (MCP) server for AI-assisted development of CAP applications.
-
socraticode io.github.giancarloerra/socraticode
MCP server for enterprise local codebase indexing, semantic search, and code dependency graphs.
Publicado en Claude Code: claude-plugins-official (5)
-
mdk-mcp-server io.github.SAP/mdk-mcp-server
Model Context Protocol (MCP) server for AI-assisted development of MDK applications.
-
mcp-server io.github.cap-js/mcp-server
Model Context Protocol (MCP) server for AI-assisted development of CAP applications.
-
Skills for designing and building MCP servers that work seamlessly with Claude. Guides you through deployment models (remote HTTP, MCPB, local), tool design patterns, auth, and…
-
Predict structures, screen molecules and proteins, and design binders with Boltz from Claude Code.
-
An MCP server giving access to Grafana dashboards, data and more.
Publicado en Claude: knowledge-work-plugins (5)
-
Figma design platform integration. Access design files, extract component information, read design tokens, and translate designs into code. Bridge the gap between design and…
-
MCP server for terminal commands, file operations, and process management
-
Connect to preclinical research tools and databases (literature search, genomics analysis, target prioritization) to accelerate early-stage life sciences R&D
-
Search companies and contacts, enrich leads, find lookalikes, and get AI-ranked contact recommendations. Pre-built skills chain multiple ZoomInfo tools into complete B2B sales…
-
An authenticated hosted MCP server that accesses your PlanetScale organizations, databases, branches, schema, and Insights data. Query against your data, surface slow queries, and…
Publicado en Codex: openai-curated (openai/plugins) (5)
-
Predict structures, screen molecules and proteins, and design binders.
-
General life-sciences research workflows with query routing, evidence synthesis, and optional parallel subagent analysis across genetics, omics, biology, chemistry, structure…
-
Skills for NVIDIAs ecosystem spans GPU acceleration, CUDA, AI agents, inference, robotics, Physical AI, Omniverse, and simulation. This plugin helps you understand the pieces…
-
Consensus is the go-to MCP for academic research. Connect directly to 220M+ peer-reviewed papers to search, synthesize, and build structured research outputs from within your…
-
Use MagicPath to find, inspect, install, create, and edit UI components from Codex.
Publicado en Community GitHub marketplaces (5)
-
arxiv-mcp-server io.github.blazickjp/arxiv-mcp-server
Search arXiv papers, download full text, semantic search, citation graphs, and alerts via MCP.
-
tooluniverse io.github.mims-harvard/tooluniverse
2,700+ scientific tools for AI scientists: life science, research, literature, and more.
-
Read-only biomedical search and evidence retrieval across BioMCP's CLI command grammar (genes, variants, trials, articles, drugs, diseases, pathways, proteins, and more). Wires…
-
Tabular data retrieval. Index CSV/Excel, query rows, aggregate. 99%+ savings vs raw file reads.
-
socraticode io.github.giancarloerra/socraticode
MCP server for enterprise local codebase indexing, semantic search, and code dependency graphs.
Publicado en Copilot CLI: github/awesome-copilot (5)
-
Complete toolkit for building Model Context Protocol (MCP) servers in Go using the official github.com/modelcontextprotocol/go-sdk. Includes instructions for best practices, a…
-
Complete toolkit for building Model Context Protocol (MCP) servers in TypeScript/Node.js using the official SDK. Includes instructions for best practices, a prompt for generating…
-
Explore and query TimeBase streams, schemas, QQL, symbols, and server status via MCP.
-
Complete toolkit for building Model Context Protocol (MCP) servers in Kotlin using the official io.modelcontextprotocol:kotlin-sdk library. Includes instructions for best…
-
Comprehensive resources for building Model Context Protocol servers using the official PHP SDK with attribute-based discovery, including best practices, project generation, and…
Publicado en Copilot CLI: github/copilot-plugins (5)
-
mcp-apps
Generate MCP App widgets for MCP tools. Produces self-contained HTML widgets using the MCP Apps protocol.
-
Build Power Apps Canvas Apps using the Canvas Authoring MCP server.
-
model-apps
Build and deploy Power Apps generative pages for model-driven apps with specialist agents for planning, entity creation, and parallel code generation. Requires PAC CLI >= 2.7.0…
-
Navigate and interact with your C++ code using the Microsoft C++ Language Server.
-
Toolkit for building Microsoft 365 Copilot declarative agents — scaffolding, JSON manifest development, and capability configuration.
Publicado en Cursor: cursor/plugins (5)
-
Let Grok Bot reach MCP servers on your private Tailscale network: connect your own tailnet, or your team's company tailnets turned on by a team admin, with each member using their…
-
Build apps, scripts, and automations with the TypeScript SDK.
-
CLI-backed repo compatibility scans plus agents that audit startup, validation, and docs against reality.
-
Browse Microsoft Power BI workspaces and render report pages.
-
playwright-mcp io.github.microsoft/playwright-mcp
Playwright Tools for MCP
Publicado en Docker MCP Catalog (5)
-
Access to Rube's catalog of remote MCP servers.
-
Git repository interaction and automation.
-
The Official Model Context Protocol (MCP) server for Kagi Search & other tools.
-
npm-sentinel-mcp io.github.Nekzus/npm-sentinel-mcp
Advanced NPM analysis: Recursive security scanning, ecosystem awareness, and deep insights.
-
Firecrawl, the context API for AI agents: search, scrape, interact with the web, plus paper search.
Publicado en Official MCP Registry (5)
-
MCP server to search, inspect, and cross-reference RCSB Protein Data Bank structures
-
protein-mcp-server io.github.cyanheads/protein-mcp-server
Federated protein structure & annotation across experimental (PDB) and predicted (AlphaFold) models.
-
uniprot-mcp-server io.github.cyanheads/uniprot-mcp-server
Protein research over UniProtKB: search by function, fetch curated records, map IDs, proteomes.
-
rcsb-pdb-mcp io.github.mrfentmen/rcsb-pdb-mcp
Look up protein structures and search the RCSB Protein Data Bank. No key required.
-
ebi-search-mcp io.github.mrfentmen/ebi-search-mcp
EBI Search API: search EMBL-EBI biomedical databases.
Publicado en PyPI (MCP servers) (5)
-
MCP server for AlphaFold and 8 other biomedical data sources with a local SQLite knowledge graph
-
Verifiable, release-aware protein evidence workflows over UniProt and linked scientific sources.
-
Molecule names or SMILES to 2D structures, reactions, mechanisms, spectra - offline via RDKit.
-
arxiv-mcp-server io.github.blazickjp/arxiv-mcp-server
Search arXiv papers, download full text, semantic search, citation graphs, and alerts via MCP.
-
A MCP (Model Context Protocol) server for interacting with dbt resources.
Publicado en npm registry (MCP servers) (5)
-
protein-mcp-server io.github.cyanheads/protein-mcp-server
Federated protein structure & annotation across experimental (PDB) and predicted (AlphaFold) models.
-
uniprot-mcp-server io.github.cyanheads/uniprot-mcp-server
Protein research over UniProtKB: search by function, fetch curated records, map IDs, proteomes.
-
pubchem-mcp-server io.github.cyanheads/pubchem-mcp-server
Search PubChem compounds, properties, safety data, bioactivity, and cross-references.
-
Biomedical MCP server: genes, variants, trials, literature, patents, optional SQL/R/biowasm tools.
-
chembl-mcp-server io.github.cyanheads/chembl-mcp-server
Link compounds to protein targets, rank bioactivity, and look up drug mechanisms and indications.
Encontrados por significado, no por código ni repositorio compartidos: los plugins similares siguen siendo productos distintos, y esto no es una reseña ni una recomendación.
¿Quieres esta marca para tu plugin en nuestro catálogo?
Demuestra que lo mantienes con un archivo en su repositorio, un archivo en tu dominio o un registro DNS, y podrás mostrar esta marca en la ficha, con banners en vivo para tu web y tu README. Cómo funciona la verificación
Además recibirás avisos cuando un marketplace lo publique, lo retire, cambie su marca verificada o lo que pide, y su endpoint remoto quedará monitorizado como un servicio web.
Datos de Official MCP Registry. Las cifras proceden de nuestros propios recorridos periódicos por los marketplaces, leída por última vez el . No publicamos datos de contacto de los editores de plugins.