io.github.mrfentmen/ols-mcp
Search and read terms across hundreds of biomedical ontologies via the EBI OLS - keyless.
MCP server · by mrfentmen
About
io.github.mrfentmen/ols-mcp is an MCP server published by mrfentmen. Marketplaces we read that list it: 1 (Official MCP Registry). We first saw it on 2026-10-27 and have recorded no change since. As of our marketplace pass on 2026-11-03.
What it asks for
- Runs on your machine
None of the marketplaces we read publishes its tools or the settings it asks for.
What it declares, asks for and runs, in full
Only install plugins from developers you trust. We list what marketplaces publish and do not test plugins.
Works with
- Claude Code
- Codex
- Cursor
- VS Code
- Copilot CLI
A one-click link opens the client, which asks you to confirm before it adds the server.
From the marketplaces that list it and the MCP transport it declares, as each client documents them. We do not test plugins.
Connect
Commands and configs built only from what its marketplaces declare. We do not run them for you and do not test plugins.
As a local MCP server: npm package
Built from what Official MCP Registry declares.
claude mcp add --transport stdio ols-mcp -- npx -y @mrfentmen/ols-mcp[mcp_servers.ols-mcp]
command = "npx"
args = ["-y", "@mrfentmen/ols-mcp"]{
"mcpServers": {
"ols-mcp": {
"command": "npx",
"args": [
"-y",
"@mrfentmen/ols-mcp"
]
}
}
}Where it is published
| Marketplace | Status | Version | Figures | Verified | First seen |
|---|---|---|---|---|---|
| Official MCP Registry (Open the registry record) | Listed | 1.0.0 | Forks (GitHub): 0 Stars (GitHub): 0 |
Not marked |
Each figure is the marketplace's own and is never added up across marketplaces. A marketplace that publishes no figure shows none: no number is not zero.
What changed
- Became a product we track
- Official MCP Registry: appeared
Similar plugins
Products whose own names, descriptions, tools and skills are closest in meaning to this one, on every marketplace we read. Closeness is ranked within this list only.
-
ontology-access-kit
Skills for querying ontologies using the Ontology Access Kit (OAK)
-
quickgo-mcp io.github.mrfentmen/quickgo-mcp
Gene Ontology terms, definitions, hierarchy and protein annotations via EBI QuickGO - keyless.
-
hpo-mcp io.github.mrfentmen/hpo-mcp
Search HPO phenotype terms, read definitions and explore the phenotype hierarchy - keyless.
-
robot-obo-tool
Skills for using ROBOT, the OBO ontology command-line toolkit for reasoning, templates, quality control, and ontology manipulation
-
opentargets io.github.nickzren/opentargets
Read-only Open Targets: targets, diseases, drugs and evidence by name or ID. No API key needed.
-
Naturepedia Canonical Discovery
Search and resolve Naturepedia, Robbie's Razor, and GC-MRD-v2.0 canonical resources.
-
Read-only biomedical search and evidence retrieval across BioMCP's CLI command grammar (genes, variants, trials, articles, drugs, diseases, pathways, proteins, and more). Wires…
-
ebi-search-mcp io.github.mrfentmen/ebi-search-mcp
EBI Search API: search EMBL-EBI biomedical databases.
-
50+ biomedical data sources in one MCP server — PubMed, ClinVar, gnomAD, KEGG, and more
-
Read and write one codebase ontology kept as Markdown in the repository.
Similar plugins by marketplace
The same question asked of one marketplace at a time: is there an analog of this plugin there?
Has a listing on Claude Code: claude-plugins-community (5)
-
AI-native ontology engineering with 39 MCP tools backed by an in-memory Oxigraph triple store. Build, validate, query, and govern RDF/OWL ontologies using a…
-
197 ready-to-use life sciences skills that turn Claude into a domain expert for genomics, proteomics, drug discovery, biostatistics, scientific computing, and scientific writing…
-
Forensic-grade PubMed research engine for Claude Code. Search 36M+ biomedical articles with PICO-structured queries, synthesize evidence with GRADE confidence ratings, critically…
-
AI-powered biblical research tools — lexicons, morphology, manuscripts, and more.
-
Build and query Compact Knowledge Graphs directly in Claude Code. Includes a skill to convert any CSV into a CKG and an MCP server with 8 pre-built domains. 42x more efficient…
Has a listing on Claude Code: claude-plugins-official (5)
-
Create, connect, and interact with an AlloyDB for PostgreSQL database and data.
-
DataHub development and interaction toolkit with connector planning, PR review, catalog search, metadata enrichment, lineage tracing, data quality management, and connection setup…
-
Atlan data catalog plugin for Claude Code. Search, explore, govern, and manage your data assets through natural language. Powered by the Atlan MCP server with semantic search…
-
Dynatrace observability skills: DQL query patterns, application and infrastructure monitoring, log analysis, problem investigation, and incident response workflows, with the…
-
Precise local semantic code search via MCP. Indexes your codebase with Go AST parsing, embeds with Ollama or LM Studio, and exposes vector search to Claude through an MCP server…
Has a listing on Claude: knowledge-work-plugins (5)
-
Connect to preclinical research tools and databases (literature search, genomics analysis, target prioritization) to accelerate early-stage life sciences R&D
-
Evidence-backed BioPharma research workflows over Maven Bio's drug, trial, company, and deal knowledge graph. Skills for competitive pipelines, indication landscapes, asset…
-
Atlan data catalog plugin for Claude Code. Search, explore, govern, and manage your data assets through natural language. Powered by the Atlan MCP server with semantic search…
-
informatica-for-claude-platform
Governed catalog discovery for Informatica Intelligent Data Management Cloud (CDGC): find tables, columns, files, glossary terms and policies across the enterprise catalog, check…
-
Hosted MCP server for AI-assisted Grafana Cloud observability — no local installation required.
Has a listing on Codex: openai-curated (openai/plugins) (5)
-
General life-sciences research workflows with query routing, evidence synthesis, and optional parallel subagent analysis across genetics, omics, biology, chemistry, structure…
-
Predict structures, screen molecules and proteins, and design binders.
-
Guided NGS intake, local execution, and public-pipeline routing for BCL, FASTQ, DNA variant, RNA-seq, single-cell, epigenomics, amplicon, and metagenomics analyses, with deeper…
-
Evaluate Codex skills and plugins from chat with a beginner-friendly start command, local-first reports, token budget explanations, and guided benchmarking.
-
Skills for NVIDIAs ecosystem spans GPU acceleration, CUDA, AI agents, inference, robotics, Physical AI, Omniverse, and simulation. This plugin helps you understand the pieces…
Has a listing on Community GitHub marketplaces (5)
-
ontology-access-kit
Skills for querying ontologies using the Ontology Access Kit (OAK)
-
robot-obo-tool
Skills for using ROBOT, the OBO ontology command-line toolkit for reasoning, templates, quality control, and ontology manipulation
-
Read-only biomedical search and evidence retrieval across BioMCP's CLI command grammar (genes, variants, trials, articles, drugs, diseases, pathways, proteins, and more). Wires…
-
editing-obo-ontologies
Skills and tools for editing OBO format ontologies
-
scientific-databases
Programmatic access to public scientific databases and APIs.
Has a listing on Copilot CLI: github/awesome-copilot (5)
-
Safe BLE diagnostics, evidence workflows, and guarded automation for AI agents.
-
Three-layer verification pipeline for AI output. Extracts claims, finds sources, and flags hallucination risks so humans can verify before acting.
-
Use Datadog directly in Copilot / VS Code through a preconfigured Datadog MCP server. Query logs, metrics, traces, dashboards, and more through natural conversation.
-
Complete toolkit for building Model Context Protocol (MCP) servers in Go using the official github.com/modelcontextprotocol/go-sdk. Includes instructions for best practices, a…
-
Interactive GitHub Copilot canvas for discovering, connecting, and managing hosted MCP servers from an Azure Connector Namespace.
Has a listing on Copilot CLI: github/copilot-plugins (5)
-
Toolkit for building Microsoft 365 Copilot declarative agents — scaffolding, JSON manifest development, and capability configuration.
-
workiq
Query Microsoft 365 data with natural language — emails, meetings, documents, Teams messages, and more.
-
mcp-apps
Generate MCP App widgets for MCP tools. Produces self-contained HTML widgets using the MCP Apps protocol.
-
Build Power Apps Canvas Apps using the Canvas Authoring MCP server.
-
model-apps
Build and deploy Power Apps generative pages for model-driven apps with specialist agents for planning, entity creation, and parallel code generation. Requires PAC CLI >= 2.7.0…
Has a listing on Cursor: cursor/plugins (5)
-
Ask Databricks Genie questions about your workspace's data in plain language.
-
Work with PostHog from chat: query product analytics and run SQL, manage feature flags and experiments, triage error tracking issues, and review session replays, surveys, and…
-
CLI-backed repo compatibility scans plus agents that audit startup, validation, and docs against reality.
-
Enrich people and companies, run AI research agents.
-
Explore datasets and tables and run SQL queries.
Has a listing on Docker MCP Catalog (5)
-
The Official Model Context Protocol (MCP) server for Kagi Search & other tools.
-
Read and score Opik traces, experiments, datasets and prompts from your AI assistant.
-
Generate, run, debug lifescience workflows.
-
MCP server for AI access to SmartBear tools, including BugSnag, Reflect, Swagger, PactFlow, QTM4J.
-
A Model Context Protocol (MCP) server implementation that provides database capabilities for Chroma.
Has a listing on Official MCP Registry (5)
-
quickgo-mcp io.github.mrfentmen/quickgo-mcp
Gene Ontology terms, definitions, hierarchy and protein annotations via EBI QuickGO - keyless.
-
hpo-mcp io.github.mrfentmen/hpo-mcp
Search HPO phenotype terms, read definitions and explore the phenotype hierarchy - keyless.
-
opentargets io.github.nickzren/opentargets
Read-only Open Targets: targets, diseases, drugs and evidence by name or ID. No API key needed.
-
Naturepedia Canonical Discovery
Search and resolve Naturepedia, Robbie's Razor, and GC-MRD-v2.0 canonical resources.
-
ebi-search-mcp io.github.mrfentmen/ebi-search-mcp
EBI Search API: search EMBL-EBI biomedical databases.
Has a listing on PyPI (MCP servers) (5)
-
opentargets io.github.nickzren/opentargets
Read-only Open Targets: targets, diseases, drugs and evidence by name or ID. No API key needed.
-
MCP server for AlphaFold and 8 other biomedical data sources with a local SQLite knowledge graph
-
Find & fetch research datasets across 21 archives, omics registries, and literature sources.
-
Semantic knowledge engine for Obsidian with auto-classification and DAG hierarchy
-
Verifiable, release-aware protein evidence workflows over UniProt and linked scientific sources.
Has a listing on npm registry (MCP servers) (5)
-
uniprot-mcp-server io.github.cyanheads/uniprot-mcp-server
Protein research over UniProtKB: search by function, fetch curated records, map IDs, proteomes.
-
ensembl-mcp-server io.github.cyanheads/ensembl-mcp-server
Look up genes, sequences, variants, homologs, and cross-database xrefs from Ensembl REST.
-
gbif-biodiversity-mcp-server io.github.cyanheads/gbif-biodiversity-mcp-server
Search GBIF species taxonomy, occurrence records, datasets, and publishers.
-
chembl-mcp-server io.github.cyanheads/chembl-mcp-server
Link compounds to protein targets, rank bioactivity, and look up drug mechanisms and indications.
-
pubcrawl io.github.nickjlamb/pubcrawl
PubMed & Europe PMC literature search, US/UK drug labelling, and clinical trials for AI assistants.
Found by meaning, not by shared code or a shared repository: similar plugins stay separate products, and this is not a review or a recommendation.
Want this mark on your plugin in our catalog?
Prove you maintain it with a file in its repository, a file on your domain or a DNS record, and you can show this mark on the card, with live banners for your site and README. How verification works
You also get alerts when a marketplace lists it, drops it, changes its verified mark or what it asks for, and its remote endpoint goes on monitoring as a web service.
Data comes from the Official MCP Registry (registry.modelcontextprotocol.io), CC0 1.0. Figures come from our own regular passes over the marketplaces, last read on . We publish no contact details for plugin publishers.