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AWS HealthOmics

Generate, run, debug lifescience workflows.

MCP server · by awslabs

About

AWS HealthOmics is an MCP server published by awslabs. Marketplaces we read that list it: 1 (Docker MCP Catalog). The last change we recorded was on 2026-10-12. As of our marketplace pass on 2026-10-12.

What it asks for

  • Runs on your machine
  • Settings: 2
  • Tools: 73

Tools it declares: 73. As declared on: Docker MCP Catalog.

  • ActivateAHOReadSets
  • AnalyzeAHORunPerformance
  • CancelAHORunBatch
  • CheckContainerAvailability
  • CloneContainerToECR
  • CreateAHOConfiguration
  • CreateAHORunCache
  • CreateAHORunGroup
  • CreateAHOSequenceStore
  • CreateAHOWorkflow
  • CreateAHOWorkflowVersion
  • CreateCodeConnection
Show the remaining 61
  • CreateContainerRegistryMap
  • CreatePullThroughCacheForHealthOmics
  • DeleteAHOBatch
  • DeleteAHOConfiguration
  • DeleteAHORunBatch
  • DiagnoseAHORunFailure
  • GenerateAHORunTimeline
  • GetAHOBatch
  • GetAHOConfiguration
  • GetAHOReadSetExportJob
  • GetAHOReadSetImportJob
  • GetAHOReadSetMetadata
  • GetAHOReferenceImportJob
  • GetAHOReferenceMetadata
  • GetAHOReferenceStore
  • GetAHORun
  • GetAHORunCache
  • GetAHORunEngineLogs
  • GetAHORunGroup
  • GetAHORunLogs
  • GetAHORunManifestLogs
  • GetAHORunTask
  • GetAHOSequenceStore
  • GetAHOSupportedRegions
  • GetAHOTaskLogs
  • GetAHOWorkflow
  • GetCodeConnection
  • GetSupportedFileTypes
  • GrantHealthOmicsRepositoryAccess
  • LintAHOWorkflowBundle
  • LintAHOWorkflowDefinition
  • ListAHOBatches
  • ListAHOConfigurations
  • ListAHOReadSetExportJobs
  • ListAHOReadSetImportJobs
  • ListAHOReadSets
  • ListAHOReferenceImportJobs
  • ListAHOReferenceStores
  • ListAHOReferences
  • ListAHORunCaches
  • ListAHORunGroups
  • ListAHORunTasks
  • ListAHORuns
  • ListAHORunsInBatch
  • ListAHOSequenceStores
  • ListAHOWorkflowVersions
  • ListAHOWorkflows
  • ListCodeConnections
  • ListECRRepositories
  • ListPullThroughCacheRules
  • PackageAHOWorkflow
  • SearchGenomicsFiles
  • StartAHOReadSetExportJob
  • StartAHOReadSetImportJob
  • StartAHOReferenceImportJob
  • StartAHORun
  • StartAHORunBatch
  • UpdateAHORunCache
  • UpdateAHORunGroup
  • UpdateAHOSequenceStore
  • ValidateHealthOmicsECRConfig

What it declares, asks for and runs, in full

Only install plugins from developers you trust. We list what marketplaces publish and do not test plugins.

Connect

Commands and configs built only from what its marketplaces declare. We do not run them for you and do not test plugins.

As a local MCP server: Docker image

Built from what Docker MCP Catalog declares.

Claude CodeTerminal
claude mcp add --transport stdio aws-healthomics -- docker run -i --rm mcp/aws-healthomics-mcp-server
Codex~/.codex/config.toml
[mcp_servers.aws-healthomics]
command = "docker"
args = ["run", "-i", "--rm", "mcp/aws-healthomics-mcp-server"]
Cursor~/.cursor/mcp.json
{
  "mcpServers": {
    "aws-healthomics": {
      "command": "docker",
      "args": [
        "run",
        "-i",
        "--rm",
        "mcp/aws-healthomics-mcp-server"
      ]
    }
  }
}
DockerTerminal
docker run -i --rm mcp/aws-healthomics-mcp-server

Optional settings it also lists: AWS_PROFILE, AWS_REGION.

We do not store launch arguments. If the server needs any, its own documentation names them.

Where it is published

MarketplaceStatusVersionFiguresVerifiedFirst seen
Docker MCP Catalog (Open on Docker Hub) Listed sha256:ec0cd4776cbe Forks (GitHub): 1 805
Pulls (Docker Hub): 12 346
Stars (Docker Hub): 0
Stars (GitHub): 9 767
Not marked

Each figure is the marketplace's own and is never added up across marketplaces. A marketplace that publishes no figure shows none: no number is not zero.

What changed

Nothing has moved on this plugin since we started watching it.

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Found by meaning, not by shared code or a shared repository: similar plugins stay separate products, and this is not a review or a recommendation.

Is this your plugin?

Prove you maintain it with a file in its repository, a file on your domain or a DNS record. You get alerts when a marketplace lists it, drops it, changes its verified mark or what it asks for, and can put its remote endpoint on monitoring as a web service.

Data comes from the Docker MCP Catalog (desktop.docker.com/mcp/catalog) and Docker Hub. Figures come from our own regular passes over the marketplaces, last read on . We publish no contact details for plugin publishers.

Where the data comes from: how the catalog is built