BioMCP-TS
Biomedical MCP server: genes, variants, trials, literature, patents, optional SQL/R/biowasm tools.
MCP server · by yeyuan98
About
BioMCP-TS is an MCP server published by yeyuan98. Marketplaces we read that list it: 1 (Official MCP Registry). We first saw it on 2026-10-11 and have recorded no change since. As of our marketplace pass on 2026-10-13.
What it asks for
- Runs on your machine
- Secrets: 5
- Settings: 8
Requires: DISGENET_API_KEY (secret), NCBI_API_KEY (secret), ONCOKB_TOKEN (secret), OPENFDA_API_KEY (secret), S2_API_KEY (secret)
What it declares, asks for and runs, in full
Only install plugins from developers you trust. We list what marketplaces publish and do not test plugins.
Package
- npm downloads/week: 141 (2026-10-12)
- npm downloads/month: 1 108 (2026-10-12)
- Latest version on npm: 1.5.0, published 2026-09-19
- Declared version 1.4.3 is not listed on npm
npm facts come from the public npm registry (registry.npmjs.org, api.npmjs.org). Each figure is the registry's own and is never added to another. A registry that publishes no figure shows none: no number is not zero.
Works with
- Claude Code
- Codex
- Cursor
- VS Code
- Copilot CLI
From the marketplaces that list it and the MCP transport it declares, as each client documents them. We do not test plugins.
Connect
Commands and configs built only from what its marketplaces declare. We do not run them for you and do not test plugins.
As a local MCP server: npm package
Built from what Official MCP Registry declares.
claude mcp add --env "DISGENET_API_KEY=<YOUR_DISGENET_API_KEY>" --env "NCBI_API_KEY=<YOUR_NCBI_API_KEY>" --env "ONCOKB_TOKEN=<YOUR_ONCOKB_TOKEN>" --env "OPENFDA_API_KEY=<YOUR_OPENFDA_API_KEY>" --env "S2_API_KEY=<YOUR_S2_API_KEY>" --transport stdio biomcp-ts -- npx -y biomcp[mcp_servers.biomcp-ts]
command = "npx"
args = ["-y", "biomcp"]
[mcp_servers.biomcp-ts.env]
DISGENET_API_KEY = "<YOUR_DISGENET_API_KEY>"
NCBI_API_KEY = "<YOUR_NCBI_API_KEY>"
ONCOKB_TOKEN = "<YOUR_ONCOKB_TOKEN>"
OPENFDA_API_KEY = "<YOUR_OPENFDA_API_KEY>"
S2_API_KEY = "<YOUR_S2_API_KEY>"{
"mcpServers": {
"biomcp-ts": {
"command": "npx",
"args": [
"-y",
"biomcp"
],
"env": {
"DISGENET_API_KEY": "<YOUR_DISGENET_API_KEY>",
"NCBI_API_KEY": "<YOUR_NCBI_API_KEY>",
"ONCOKB_TOKEN": "<YOUR_ONCOKB_TOKEN>",
"OPENFDA_API_KEY": "<YOUR_OPENFDA_API_KEY>",
"S2_API_KEY": "<YOUR_S2_API_KEY>"
}
}
}
}Replace the values in angle brackets with your own. We show the names of the settings, never values.
Optional settings it also lists: ANALYSIS_BIOWASM, ANALYSIS_R, DB_TYPE.
Where it is published
| Marketplace | Status | Version | Figures | Verified | First seen |
|---|---|---|---|---|---|
| Official MCP Registry (Open the registry record) | Listed | 1.4.3 | Downloads/month (npm): 1 108 Downloads/week (npm): 141 Forks (GitHub): 2 Stars (GitHub): 12 |
Not marked |
Each figure is the marketplace's own and is never added up across marketplaces. A marketplace that publishes no figure shows none: no number is not zero.
What changed
Nothing has moved on this plugin since we started watching it.
Similar plugins
Products whose own names, descriptions, tools and skills are closest in meaning to this one, on every marketplace we read. Closeness is ranked within this list only.
-
genefoundry io.github.berntpopp/genefoundry
MCP gateway federating 22 biomedical MCP servers behind one endpoint: gnomAD, ClinVar, HPO, VEP.
-
50+ biomedical data sources in one MCP server — PubMed, ClinVar, gnomAD, KEGG, and more
-
Bounded genomic data from archives and indexed files, with versioned reference evidence.
-
Bioinformatics and genomic sequence parser for clinical research.
-
pharma-mcp io.github.pubspro/pharma-mcp
MCP server for ClinicalTrials.gov, PubMed, FDA drug labels, FAERS, and ICH guidelines.
-
opentargets-mcp io.github.mrfentmen/opentargets-mcp
Keyless MCP server for Open Targets: gene/disease/drug search, target details, disease associations.
-
ebi-search-mcp io.github.mrfentmen/ebi-search-mcp
EBI Search API: search EMBL-EBI biomedical databases.
-
MCP server for the CZ CELLxGENE Census. Single-cell, ontology-aware. Community, unaffiliated.
-
ensembl-mcp-server io.github.cyanheads/ensembl-mcp-server
Look up genes, sequences, variants, homologs, and cross-database xrefs from Ensembl REST.
-
tooluniverse io.github.mims-harvard/tooluniverse
2,700+ scientific tools for AI scientists: life science, research, literature, and more.
Similar plugins by marketplace
The same question asked of one marketplace at a time: is there an analog of this plugin there?
Has a listing on Claude Code: claude-plugins-community (5)
-
mcp-server io.github.cap-js/mcp-server
Model Context Protocol (MCP) server for AI-assisted development of CAP applications.
-
nodebench io.github.HomenShum/nodebench
260 MCP tools across 49 domains. AI Flywheel, quality gates, research, web scraping.
-
Zero-config MCP server for searchable documentation. SQLite or PostgreSQL.
-
mdk-mcp-server io.github.SAP/mdk-mcp-server
Model Context Protocol (MCP) server for AI-assisted development of MDK applications.
-
socraticode io.github.giancarloerra/socraticode
MCP server for enterprise local codebase indexing, semantic search, and code dependency graphs.
Has a listing on Claude Code: claude-plugins-official (5)
-
mcp-server io.github.cap-js/mcp-server
Model Context Protocol (MCP) server for AI-assisted development of CAP applications.
-
mdk-mcp-server io.github.SAP/mdk-mcp-server
Model Context Protocol (MCP) server for AI-assisted development of MDK applications.
-
Skills for designing and building MCP servers that work seamlessly with Claude. Guides you through deployment models (remote HTTP, MCPB, local), tool design patterns, auth, and…
-
MCP server for terminal commands, file operations, and process management
-
firebase-mcp io.github.firebase/firebase-mcp
Gives AI development tools Firebase-specific capabilities and expertise.
Has a listing on Claude: knowledge-work-plugins (5)
-
Connect to preclinical research tools and databases (literature search, genomics analysis, target prioritization) to accelerate early-stage life sciences R&D
-
MCP server for terminal commands, file operations, and process management
-
Figma design platform integration. Access design files, extract component information, read design tokens, and translate designs into code. Bridge the gap between design and…
-
Evidence-backed BioPharma research workflows over Maven Bio's drug, trial, company, and deal knowledge graph. Skills for competitive pipelines, indication landscapes, asset…
-
Search companies and contacts, enrich leads, find lookalikes, and get AI-ranked contact recommendations. Pre-built skills chain multiple ZoomInfo tools into complete B2B sales…
Has a listing on Codex: openai-curated (openai/plugins) (5)
-
General life-sciences research workflows with query routing, evidence synthesis, and optional parallel subagent analysis across genetics, omics, biology, chemistry, structure…
-
Guided NGS intake, local execution, and public-pipeline routing for BCL, FASTQ, DNA variant, RNA-seq, single-cell, epigenomics, amplicon, and metagenomics analyses, with deeper…
-
Predict structures, screen molecules and proteins, and design binders.
-
Consensus is the go-to MCP for academic research. Connect directly to 220M+ peer-reviewed papers to search, synthesize, and build structured research outputs from within your…
-
Skills for NVIDIAs ecosystem spans GPU acceleration, CUDA, AI agents, inference, robotics, Physical AI, Omniverse, and simulation. This plugin helps you understand the pieces…
Has a listing on Community GitHub marketplaces (5)
-
HTTP/REST client with saved collections, env secrets, and SSRF-safe host allowlisting.
-
MCP server for terminal commands, file operations, and process management
-
4da-mcp-server io.github.4DA-Systems/4da-mcp-server
Upgrade intelligence for AI agents: what an upgrade changes, where it touches your code, CVE scans.
-
FastMCP server for surgical queries against a vault knowledge graph (NetworkX no
FastMCP server for surgical queries against a vault knowledge graph (NetworkX node-link JSON).…
-
FastMCP server for bidirectional sync between personal and team Obsidian vaults
FastMCP server for bidirectional sync between personal and team Obsidian vaults.
Has a listing on Copilot CLI: github/awesome-copilot (5)
-
Complete toolkit for building Model Context Protocol (MCP) servers in TypeScript/Node.js using the official SDK. Includes instructions for best practices, a prompt for generating…
-
Complete toolkit for building Model Context Protocol (MCP) servers in Go using the official github.com/modelcontextprotocol/go-sdk. Includes instructions for best practices, a…
-
Safe BLE diagnostics, evidence workflows, and guarded automation for AI agents.
-
Complete toolkit for building Model Context Protocol (MCP) servers in Kotlin using the official io.modelcontextprotocol:kotlin-sdk library. Includes instructions for best…
-
Figma design platform integration. Access design files, extract component information, read design tokens, and translate designs into code. Bridge the gap between design and…
Has a listing on Copilot CLI: github/copilot-plugins (5)
-
mcp-apps
Generate MCP App widgets for MCP tools. Produces self-contained HTML widgets using the MCP Apps protocol.
-
Build Power Apps Canvas Apps using the Canvas Authoring MCP server.
-
Toolkit for building Microsoft 365 Copilot declarative agents — scaffolding, JSON manifest development, and capability configuration.
-
model-apps
Build and deploy Power Apps generative pages for model-driven apps with specialist agents for planning, entity creation, and parallel code generation. Requires PAC CLI >= 2.7.0…
-
Navigate and interact with your C++ code using the Microsoft C++ Language Server.
Has a listing on Cursor: cursor/plugins (5)
-
Work with PostHog from chat: query product analytics and run SQL, manage feature flags and experiments, triage error tracking issues, and review session replays, surveys, and…
-
Fan large tasks out across parallel cloud agents with planners, workers, verifiers, and structured handoffs.
-
Inspect and manage feature gates, experiments, dynamic configs, and metrics.
-
playwright-mcp io.github.microsoft/playwright-mcp
Playwright Tools for MCP
-
CLI-backed repo compatibility scans plus agents that audit startup, validation, and docs against reality.
Has a listing on Docker MCP Catalog (5)
-
The Official Model Context Protocol (MCP) server for Kagi Search & other tools.
-
Dynatrace-mcp io.github.dynatrace-oss/Dynatrace-mcp
[DEPRECATED] Dynatrace MCP Server. Migrate to dynatrace-for-ai or Dynatrace Remote MCP Server.
-
Access to Rube's catalog of remote MCP servers.
-
MCP server providing Prometheus metrics access and PromQL query execution for AI assistants
-
MCP server for terminal commands, file operations, and process management
Has a listing on Official MCP Registry (5)
-
genefoundry io.github.berntpopp/genefoundry
MCP gateway federating 22 biomedical MCP servers behind one endpoint: gnomAD, ClinVar, HPO, VEP.
-
50+ biomedical data sources in one MCP server — PubMed, ClinVar, gnomAD, KEGG, and more
-
Bounded genomic data from archives and indexed files, with versioned reference evidence.
-
Bioinformatics and genomic sequence parser for clinical research.
-
pharma-mcp io.github.pubspro/pharma-mcp
MCP server for ClinicalTrials.gov, PubMed, FDA drug labels, FAERS, and ICH guidelines.
Found by meaning, not by shared code or a shared repository: similar plugins stay separate products, and this is not a review or a recommendation.
Is this your plugin?
Add it to your projects and prove you maintain it with a file in its repository, a file on your domain or a DNS record. You get alerts when a marketplace lists it, drops it, changes its verified mark or what it asks for, and its remote endpoint goes on monitoring as a web service.
Data comes from the Official MCP Registry (registry.modelcontextprotocol.io), CC0 1.0. Figures come from our own regular passes over the marketplaces, last read on . We publish no contact details for plugin publishers.