cmxflow
Composable, tunable cheminformatics workflows: library preparation, clustering, docking, and more.
MCP server · by b-shields
About
cmxflow is an MCP server published by b-shields. Marketplaces we read that list it: 1 (Official MCP Registry). We first saw it on 2026-10-11 and have recorded no change since. As of our marketplace pass on 2026-10-13.
What it asks for
- Runs on your machine
None of the marketplaces we read publishes its tools or the settings it asks for.
What it declares, asks for and runs, in full
Only install plugins from developers you trust. We list what marketplaces publish and do not test plugins.
Package
PyPI cmxflow (cmxflow on PyPI)
- PyPI downloads/week: 29 (2026-10-13)
- PyPI downloads/month: 94 (2026-10-13)
- Latest version on PyPI: 0.4.0, published 2026-06-15
No known vulnerabilities in OSV for 0.4.0 (checked 2026-10-13)
PyPI facts come from pypi.org, PyPI downloads from pypistats.org. Each figure is the registry's own and is never added to another. A registry that publishes no figure shows none: no number is not zero. Vulnerability records come from OSV.dev (CC BY 4.0) and concern the declared version only; a listing that declares no version gets no answer. We do not scan code.
Works with
- Claude Code
- Codex
- Cursor
- VS Code
- Copilot CLI
A one-click link opens the client, which asks you to confirm before it adds the server.
From the marketplaces that list it and the MCP transport it declares, as each client documents them. We do not test plugins.
Connect
Commands and configs built only from what its marketplaces declare. We do not run them for you and do not test plugins.
As a local MCP server: PyPI package
Built from what Official MCP Registry declares.
claude mcp add --transport stdio cmxflow -- uvx --from cmxflow cmxflow-mcp cmxflow[mcp_servers.cmxflow]
command = "uvx"
args = ["--from", "cmxflow", "cmxflow-mcp", "cmxflow"]{
"mcpServers": {
"cmxflow": {
"command": "uvx",
"args": [
"--from",
"cmxflow",
"cmxflow-mcp",
"cmxflow"
]
}
}
}Where it is published
| Marketplace | Status | Version | Figures | Verified | First seen |
|---|---|---|---|---|---|
| Official MCP Registry (Open the registry record) | Listed | 0.4.0 | Downloads/month (PyPI): 94 Downloads/week (PyPI): 29 Forks (GitHub): 0 Stars (GitHub): 2 |
Not marked |
Each figure is the marketplace's own and is never added up across marketplaces. A marketplace that publishes no figure shows none: no number is not zero.
What changed
Nothing has moved on this plugin since we started watching it.
Similar plugins
Products whose own names, descriptions, tools and skills are closest in meaning to this one, on every marketplace we read. Closeness is ranked within this list only.
-
labmate-mcp io.github.JonasRackl/labmate-mcp
81 chemistry tools — literature, calculations, retrosynthesis
-
chembl-mcp-server io.github.cyanheads/chembl-mcp-server
Link compounds to protein targets, rank bioactivity, and look up drug mechanisms and indications.
-
chemistry com.covasyn/chemistry
Deterministic MCP for AI agents: drug discovery, ADMET, docking, LNPs, DoE, retrosynthesis, ICH M7
-
MCP server for DECIMER image-to-SMILES chemical structure recognition
-
Design experiments and make predictions for materials & chemicals properties in your local agent
-
Arquestra — Scientific Computing Orchestration
AI orchestration for computational chemistry and HPC workflows.
-
live-chemdraw-mcp io.github.MALeitch/live-chemdraw-mcp
Connects AI assistants to a live ChemDraw window on Windows via COM automation.
-
AI-powered bioprotocol optimization — generate, search, and manage lab protocols via MCP
-
MCP server for AlphaFold and 8 other biomedical data sources with a local SQLite knowledge graph
-
Execute chembl-affinity-oracle-mcp
Premium agentic endpoint for chembl-affinity-oracle-mcp.
Similar plugins by marketplace
The same question asked of one marketplace at a time: is there an analog of this plugin there?
Has a listing on Claude Code: claude-plugins-community (5)
-
Arquestra — Scientific Computing Orchestration
AI orchestration for computational chemistry and HPC workflows.
-
Predict structures, screen molecules and proteins, and design binders with Boltz from Claude Code.
-
nodebench io.github.HomenShum/nodebench
260 MCP tools across 49 domains. AI Flywheel, quality gates, research, web scraping.
-
mcp-server io.github.cap-js/mcp-server
Model Context Protocol (MCP) server for AI-assisted development of CAP applications.
-
197 ready-to-use life sciences skills that turn Claude into a domain expert for genomics, proteomics, drug discovery, biostatistics, scientific computing, and scientific writing…
Has a listing on Claude Code: claude-plugins-official (5)
-
Predict structures, screen molecules and proteins, and design binders with Boltz from Claude Code.
-
mcp-server io.github.cap-js/mcp-server
Model Context Protocol (MCP) server for AI-assisted development of CAP applications.
-
mdk-mcp-server io.github.SAP/mdk-mcp-server
Model Context Protocol (MCP) server for AI-assisted development of MDK applications.
-
Connect Claude to a private MCP server through an Anthropic MCP tunnel. The /create-docker-mcp-tunnel command drives the Docker Compose quickstart end to end: certificates, proxy…
-
Skills for designing and building MCP servers that work seamlessly with Claude. Guides you through deployment models (remote HTTP, MCPB, local), tool design patterns, auth, and…
Has a listing on Claude: knowledge-work-plugins (5)
-
MCP server for terminal commands, file operations, and process management
-
Figma design platform integration. Access design files, extract component information, read design tokens, and translate designs into code. Bridge the gap between design and…
-
Connect to preclinical research tools and databases (literature search, genomics analysis, target prioritization) to accelerate early-stage life sciences R&D
-
Hosted MCP server for AI-assisted Grafana Cloud observability — no local installation required.
-
DataRobot skills for AI/ML workflows — model training, deployment, predictions, feature engineering, monitoring, explainability, data preparation, App Framework CI/CD, and…
Has a listing on Codex: openai-curated (openai/plugins) (5)
-
Predict structures, screen molecules and proteins, and design binders.
-
Skills for NVIDIAs ecosystem spans GPU acceleration, CUDA, AI agents, inference, robotics, Physical AI, Omniverse, and simulation. This plugin helps you understand the pieces…
-
Cloudflare platform plugin with curated skills for Workers, Wrangler, and Agents SDK plus the official Cloudflare API MCP server.
-
CrowdStrike Falcon Foundry development skills for building cybersecurity applications on the Falcon platform. Includes UI development, collections, functions, workflows, API…
-
General life-sciences research workflows with query routing, evidence synthesis, and optional parallel subagent analysis across genetics, omics, biology, chemistry, structure…
Has a listing on Community GitHub marketplaces (5)
-
Predict structures, screen molecules and proteins, and design binders with Boltz from Claude Code.
-
Run and manage scientific computing workflows from Claude Code. Arquestra orchestrates AI-driven computational chemistry, HPC jobs, and materials science tasks.
-
Composable skill packets, harvests, workflow routing, and release/audit rubrics over MCP.
-
codabench-mcp io.github.harshitAgr/codabench-mcp
MCP server for the Codabench REST API — drives a full ML-benchmark participant workflow.
-
Git-native content governance for AI agents — 27 deterministic MCP tools over stdio and HTTP.
Has a listing on Copilot CLI: github/awesome-copilot (5)
-
Complete toolkit for building Model Context Protocol (MCP) servers in TypeScript/Node.js using the official SDK. Includes instructions for best practices, a prompt for generating…
-
Complete toolkit for building Model Context Protocol (MCP) servers in Go using the official github.com/modelcontextprotocol/go-sdk. Includes instructions for best practices, a…
-
Figma design platform integration. Access design files, extract component information, read design tokens, and translate designs into code. Bridge the gap between design and…
-
Complete toolkit for building Model Context Protocol (MCP) servers in Kotlin using the official io.modelcontextprotocol:kotlin-sdk library. Includes instructions for best…
-
Safe BLE diagnostics, evidence workflows, and guarded automation for AI agents.
Has a listing on Copilot CLI: github/copilot-plugins (5)
-
mcp-apps
Generate MCP App widgets for MCP tools. Produces self-contained HTML widgets using the MCP Apps protocol.
-
Build Power Apps Canvas Apps using the Canvas Authoring MCP server.
-
Toolkit for building Microsoft 365 Copilot declarative agents — scaffolding, JSON manifest development, and capability configuration.
-
model-apps
Build and deploy Power Apps generative pages for model-driven apps with specialist agents for planning, entity creation, and parallel code generation. Requires PAC CLI >= 2.7.0…
-
power-automate
Build, edit, run, and debug Power Automate cloud flows via the FlowAgent MCP server — connection lifecycle, surgical edits, copy across environments, run management, and validated…
Has a listing on Cursor: cursor/plugins (5)
-
Fan large tasks out across parallel cloud agents with planners, workers, verifiers, and structured handoffs.
-
Let Grok Bot reach MCP servers on your private Tailscale network. Sign in to Tailscale to connect your tailnet; Grok Bot joins it as one tagged device and only reaches the hosts…
-
Build apps, scripts, and automations with the TypeScript SDK.
-
CLI-backed repo compatibility scans plus agents that audit startup, validation, and docs against reality.
-
playwright-mcp io.github.microsoft/playwright-mcp
Playwright Tools for MCP
Has a listing on Docker MCP Catalog (5)
-
A universal MCP (Model Context Protocol) server to integrate any API with Claude Desktop using only Docker configurations.
-
testkube-mcp io.github.kubeshop/testkube-mcp
MCP server for Testkube - Manage test workflows, executions, and artifacts via AI assistants
-
Giving Claude ability to run code with E2B via MCP (Model Context Protocol).
-
The Official Model Context Protocol (MCP) server for Kagi Search & other tools.
-
Discover and connect to a curated marketplace of MCP servers for extending AI agent capabilities.
Has a listing on Official MCP Registry (5)
-
labmate-mcp io.github.JonasRackl/labmate-mcp
81 chemistry tools — literature, calculations, retrosynthesis
-
chembl-mcp-server io.github.cyanheads/chembl-mcp-server
Link compounds to protein targets, rank bioactivity, and look up drug mechanisms and indications.
-
chemistry com.covasyn/chemistry
Deterministic MCP for AI agents: drug discovery, ADMET, docking, LNPs, DoE, retrosynthesis, ICH M7
-
MCP server for DECIMER image-to-SMILES chemical structure recognition
-
Design experiments and make predictions for materials & chemicals properties in your local agent
Found by meaning, not by shared code or a shared repository: similar plugins stay separate products, and this is not a review or a recommendation.
Is this your plugin?
Add it to your projects and prove you maintain it with a file in its repository, a file on your domain or a DNS record. You get alerts when a marketplace lists it, drops it, changes its verified mark or what it asks for, and its remote endpoint goes on monitoring as a web service.
Data comes from the Official MCP Registry (registry.modelcontextprotocol.io), CC0 1.0. Figures come from our own regular passes over the marketplaces, last read on . We publish no contact details for plugin publishers.