cellwhisperer
AI-assisted single-cell RNA-seq analysis: dataset processing, API-based cell scoring, and local model inference.
Plugin bundle · by Moritz Schaefer
About
cellwhisperer is a plugin bundle for AI coding tools published by Moritz Schaefer. Marketplaces we read that list it: 1 (Community GitHub marketplaces). We first saw it on 2026-10-17 and have recorded no change since. As of our marketplace pass on 2026-10-23.
What it asks for
- Installs as a plugin bundle
None of the marketplaces we read publishes its tools or the settings it asks for.
What it declares, asks for and runs, in full
Only install plugins from developers you trust. We list what marketplaces publish and do not test plugins.
Works with
- Claude Code
From the marketplaces that list it and the MCP transport it declares, as each client documents them. We do not test plugins.
Connect
Commands and configs built only from what its marketplaces declare. We do not run them for you and do not test plugins.
As a Claude Code plugin
Built from what Community GitHub marketplaces declares.
/plugin marketplace add epigen/cellwhisperer
/plugin install cellwhisperer@cellwhispererWhere it is published
| Marketplace | Status | Version | Figures | Verified | First seen |
|---|---|---|---|---|---|
| Community marketplace epigen/cellwhisperer (Open the source on GitHub) | Listed | 0.1.0 | Forks (GitHub): 31 Stars (GitHub): 223 |
Not marked |
Each figure is the marketplace's own and is never added up across marketplaces. A marketplace that publishes no figure shows none: no number is not zero.
Listed in one community marketplace
| Marketplace | Repository | Stars (GitHub) |
|---|---|---|
| cellwhisperer | epigen/cellwhisperer | 223 |
What the bundle contains
As published on Community GitHub marketplaces.
Skills: 1
cellwhisperer
What changed
- Became a product we track
- Community GitHub marketplaces: appeared
Similar plugins
Products whose own names, descriptions, tools and skills are closest in meaning to this one, on every marketplace we read. Closeness is ranked within this list only.
-
Schema-enforced spatial transcriptomics analysis with 20 tools and 67 methods via MCP
-
Run metadata-aware predictions and fine-tune AlphaGenome-PyTorch on custom genomic tracks.
-
Guided NGS intake, local execution, and public-pipeline routing for BCL, FASTQ, DNA variant, RNA-seq, single-cell, epigenomics, amplicon, and metagenomics analyses, with deeper…
-
Run real bioinformatics from your AI agent. Reliable, reproducible, on your own GPUs.
-
Hosted DNA language models: promoter, splice, enhancer, chromatin, expression, annotation
-
197 ready-to-use life sciences skills that turn Claude into a domain expert for genomics, proteomics, drug discovery, biostatistics, scientific computing, and scientific writing…
-
Expert agents for R data science and biostatistics covering data wrangling, feature engineering, model building, statistical evaluation, clinical trials, genomics, documentation…
-
Connect to preclinical research tools and databases (literature search, genomics analysis, target prioritization) to accelerate early-stage life sciences R&D
-
piaso-mcp io.github.genecell/piaso-mcp
PIASO single-cell ecosystem docs (PIASO, COSG, cytome, LARIS, cytorete) + live PIASOmarkerDB
-
SDRF annotation skills - expert-level proteomics metadata workflows for AI assistants
Similar plugins by marketplace
The same question asked of one marketplace at a time: is there an analog of this plugin there?
Has a listing on Claude Code: claude-plugins-community (5)
-
197 ready-to-use life sciences skills that turn Claude into a domain expert for genomics, proteomics, drug discovery, biostatistics, scientific computing, and scientific writing…
-
End-to-end data analysis workflow plugin for Claude Code. Covers the full pipeline from EDA to model training - EDA, preprocessing, statistical analysis, feature engineering, and…
-
A causal inference plugin for AI agents. Describe a problem in plain language and it helps you choose a method, check assumptions, write the analysis in R or Python, and…
-
Research sprint orchestrator for Claude Code. Ask a question, get a decision-ready brief — every finding is tracked as a typed claim, adversarially challenged, confidence-graded…
-
Embed and analyze sensor and time-series data using the InertialAI API. Provides MCP tools for embedding, similarity search, and nearest-neighbor classification, plus workflow…
Has a listing on Claude Code: claude-plugins-official (5)
-
DataRobot skills for AI/ML workflows — model training, deployment, predictions, feature engineering, monitoring, explainability, data preparation, App Framework CI/CD, and…
-
Skills for adding DeepEval evaluations, tracing, datasets, Confident AI reports, and iterative improvement loops to AI applications.
-
Build high-quality datasets and computer vision models. Visualize datasets, analyze models, find duplicates, run inference, evaluate predictions, and develop custom plugins.
-
Build multimodal AI applications with Pixeltable -- tables, computed columns, embedding search, UDFs, tool-calling agents, and 25+ AI provider integrations.
-
Full Domino Data Lab platform support — workspaces, jobs, model deployment, experiment tracking, GenAI tracing, Spark/Ray/Dask, and app deployment for data science teams
Has a listing on Claude: knowledge-work-plugins (5)
-
Connect to preclinical research tools and databases (literature search, genomics analysis, target prioritization) to accelerate early-stage life sciences R&D
-
DataRobot skills for AI/ML workflows — model training, deployment, predictions, feature engineering, monitoring, explainability, data preparation, App Framework CI/CD, and…
-
Build multimodal AI applications with Pixeltable -- tables, computed columns, embedding search, UDFs, tool-calling agents, and 25+ AI provider integrations.
-
Skills for working with Langfuse, the open-source LLM engineering platform for tracing, prompt management, and evaluation.
-
Evidence-backed BioPharma research workflows over Maven Bio's drug, trial, company, and deal knowledge graph. Skills for competitive pipelines, indication landscapes, asset…
Has a listing on Codex: openai-curated (openai/plugins) (5)
-
Guided NGS intake, local execution, and public-pipeline routing for BCL, FASTQ, DNA variant, RNA-seq, single-cell, epigenomics, amplicon, and metagenomics analyses, with deeper…
-
General life-sciences research workflows with query routing, evidence synthesis, and optional parallel subagent analysis across genetics, omics, biology, chemistry, structure…
-
Predict structures, screen molecules and proteins, and design binders.
-
Answer product and business questions with data
-
Skills for NVIDIAs ecosystem spans GPU acceleration, CUDA, AI agents, inference, robotics, Physical AI, Omniverse, and simulation. This plugin helps you understand the pieces…
Has a listing on Community GitHub marketplaces (5)
-
Run metadata-aware predictions and fine-tune AlphaGenome-PyTorch on custom genomic tracks.
-
197 ready-to-use life sciences skills that turn Claude into a domain expert for genomics, proteomics, drug discovery, biostatistics, scientific computing, and scientific writing…
-
Expert agents for R data science and biostatistics covering data wrangling, feature engineering, model building, statistical evaluation, clinical trials, genomics, documentation…
-
SDRF annotation skills - expert-level proteomics metadata workflows for AI assistants
-
100+ bioinformatics Agent Skills: pharmacogenomics, clinical variant interpretation, GWAS and PRS, ancestry, RNA-seq and single-cell, metagenomics, proteomics, methylation clocks…
Has a listing on Copilot CLI: github/awesome-copilot (5)
-
Run a lightweight, role-separated AI development team with flexible tools, developer-selected models, proportionate planning, and optional QA.
-
Safe BLE diagnostics, evidence workflows, and guarded automation for AI agents.
-
Visualizes live session AI-credit usage as a Pac-Man board with pellets, ghosts, fruit milestones, and game-over limits.
-
Three-layer verification pipeline for AI output. Extracts claims, finds sources, and flags hallucination risks so humans can verify before acting.
-
Task Researcher and Task Planner for intermediate to expert users and large codebases - Brought to you by microsoft/edge-ai
Has a listing on Copilot CLI: github/copilot-plugins (5)
-
Toolkit for building Microsoft 365 Copilot declarative agents — scaffolding, JSON manifest development, and capability configuration.
-
workiq
Query Microsoft 365 data with natural language — emails, meetings, documents, Teams messages, and more.
-
Build Power Apps Canvas Apps using the Canvas Authoring MCP server.
-
model-apps
Build and deploy Power Apps generative pages for model-driven apps with specialist agents for planning, entity creation, and parallel code generation. Requires PAC CLI >= 2.7.0…
-
Advanced Security plugin for GitHub Copilot.
Has a listing on Cursor: cursor/plugins (5)
-
Ask Databricks Genie questions about your workspace's data in plain language.
-
Track AI visibility, sentiment, and citations.
-
Iterative self-referential AI loops using the Ralph Wiggum technique.
-
Fan large tasks out across parallel cloud agents with planners, workers, verifiers, and structured handoffs.
-
Inspect and manage feature gates, experiments, dynamic configs, and metrics.
Has a listing on Docker MCP Catalog (5)
-
Read and score Opik traces, experiments, datasets and prompts from your AI assistant.
-
Generate, run, debug lifescience workflows.
-
Analyze documents, images, videos, and audio.
-
Sequential Thinking (Reference)
Dynamic and reflective problem-solving through thought sequences.
-
An MCP server to help make U.S. Government open datasets AI-friendly.
Has a listing on Official MCP Registry (5)
-
Schema-enforced spatial transcriptomics analysis with 20 tools and 67 methods via MCP
-
Run real bioinformatics from your AI agent. Reliable, reproducible, on your own GPUs.
-
Hosted DNA language models: promoter, splice, enhancer, chromatin, expression, annotation
-
piaso-mcp io.github.genecell/piaso-mcp
PIASO single-cell ecosystem docs (PIASO, COSG, cytome, LARIS, cytorete) + live PIASOmarkerDB
-
Connect AI clients to biomedical data and tools.
Has a listing on PyPI (MCP servers) (5)
-
MCP server for AlphaFold and 8 other biomedical data sources with a local SQLite knowledge graph
-
air-blackbox-mcp io.github.airblackbox/air-blackbox-mcp
EU AI Act compliance scanner for Python AI agents. 14 tools across 6 articles.
-
AlbumentationsX MCP for batch previews, compare preview runs, segmentation masks, and exports.
-
Connect AI assistants to openLCA. 35 tools for database search, model building, and LCIA.
-
agent-harnesses io.github.RyanAlberts/agent-harnesses
Agent-harness picks, decision guides, setup templates, and skills; live GitHub/HN discovery.
Has a listing on npm registry (MCP servers) (5)
-
SigRank SignalAF — AI Operator Cascade & Leaderboard
SigRank SignalAF on-device scanner — four-token cascade, leaderboard, 25 local tools.
-
Reverse engineer anything from your terminal or agent with one CLI and MCP server.
-
Read raw lab-instrument files offline: metadata, previews, integrity checks, open-format export.
-
google-surf-mcp io.github.HarimxChoi/google-surf-mcp
Web, academic and code search with graph RAG, data lineage, ontology and cross-project schema links.
-
redash-mcp io.github.seob717/redash-mcp
Connect Redash to Claude -- query data, manage dashboards, and run SQL with natural language.
Found by meaning, not by shared code or a shared repository: similar plugins stay separate products, and this is not a review or a recommendation.
Want this mark on your plugin in our catalog?
Prove you maintain it with a file in its repository, a file on your domain or a DNS record, and you can show this mark on the card, with live banners for your site and README. How verification works
You also get alerts when a marketplace lists it, drops it, changes its verified mark or what it asks for, and its remote endpoint goes on monitoring as a web service.
Data comes from public marketplace files in GitHub repositories of their authors. Figures come from our own regular passes over the marketplaces, last read on . We publish no contact details for plugin publishers.